Detail information of GWHGAAZE010154


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD30597.10photosystem II protein D1 (chloroplast) [Lonicera japonica]
Swissprottr|P69556|PSBA_TOBAC0Photosystem II protein D1 {ECO:0000255|HAMAP-Rule:MF_01379} (Precursor)
trEMBLtr|A0A076FQ98|A0A076FQ98_9DIPS0Photosystem Q(B) protein {ECO:0000256|RuleBase:RU004332} (Fragment)
TAIR10ATCG00020.10photosystem II reaction center protein A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123829020123830081+
GWHAAZE00000002mRNA123829020123830081+
GWHAAZE00000002exon123829020123830081+
GWHAAZE00000002CDS123829020123830081+
Transcript Sequence

Network for GWHGAAZE010154

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00124.20Photo_RC283272.80E-98
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02703psbA Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0009772biological_processphotosynthetic electron transport in photosystem II
GO:0019684biological_processphotosynthesis, light reaction
GO:0009055molecular_functionelectron transfer activity
GO:0045156molecular_functionelectron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.064
SRR3591706second leaf25.941
SRR3591707mature leaf122.006
SRR3591708Shoot apex16.149
SRR3591709Stem7.563
SRR3591710White floral bud5.358
SRR3591711White flower10.544
SRR3591712Green floral bud7.378
SRR3591713Yellow flower15.351
SRP173429 SRR8316895Juvenile bud stage 462.872
SRR8316896Juvenile bud stage 222.073
SRR8316897Juvenile bud stage 869.347
SRR8316894Third green stage 830.892
SRR8316900Third green stage 75.440
SRR8316901Third green stage 50.702
SRR8316898Complete white stage 502.538
SRR8316899Complete white stage 18.613
SRR8316903Complete white stage 389.100
SRR8316902Silver flowering stage922.291
SRR8316904Silver flowering stage706.954
SRR8316905Silver flowering stage774.101
SRR8316906Gold flowering stage 62.285
SRR8316907Gold flowering stage 42.390
SRR8316908Gold flowering stage 54.789
SRP132670SRR6706286Control7.499
SRR6706287Light intensity 50%10.263
SRR6706288Light intensity 20%8.558
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1252.162
CNS0095593Slightly white alabastrum(diploid) 2189.909
CNS0095594Slightly white alabastrum(diploid) 3219.030
CNS0095595Whole white alabastrum(diploid) 2278.807
CNS0095596Whole white alabastrum(diploid) 3201.757
CNS0095597Whole white alabastrum(diploid) 4200.264
CNS0095598Silvery flower (diploied) 1235.690
CNS0095599Silvery flower (diploied) 2234.127
CNS0095600Silvery flower (diploied) 3253.772
CNS0095601Golden flower (diploid) 1306.388
CNS0095602Golden flower (diploid) 2206.703
CNS0095603Golden flower (diploid) 3208.783
CNS0095604Slightly white alabastrum(tetraploid) 1366.922
CNS0095605Slightly white alabastrum(tetraploid) 2343.447
CNS0095606Slightly white alabastrum(tetraploid) 385.373
CNS0095607Whole white alabastrum(tetraploid) 1262.351
CNS0095608Whole white alabastrum(tetraploid) 2415.489
CNS0095609Whole white alabastrum(tetraploid) 378.122
CNS0095610Silvery flower (tetraploid) 1178.494
CNS0095611Silvery flower (tetraploid) 2268.237
CNS0095612Silvery flower (tetraploid) 3165.420
CNS0095613Golden flower (tetraploid) 1477.353
CNS0095614Golden flower (tetraploid) 2281.422
CNS0095615Golden flower (tetraploid) 3205.191
CRA001975CRR073297Stem 1123.458
CRR073298Stem 2178.615
CRR073299Stem 397.609
CRR073300Leaf 199.946
CRR073301Leaf 2102.501
CRR073302Leaf 3110.470
CRR073303Juvenile bud 1161.163
CRR073304Juvenile bud 2222.960
CRR073305Juvenile bud 3228.441
CRR073306Third green 1435.301
CRR073307Third green 2439.965
CRR073308Third green 3432.964
CRR073309Second white 12955.828
CRR073310Second white 22137.823
CRR073311Second white 32211.496
CRR073312Silver flowering 12115.999
CRR073313Silver flowering 21583.618
CRR073314Silver flowering 31125.899
CRR073315Gold flowering 13943.443
CRR073316Gold flowering 23428.289
CRR073317Gold flowering 35774.362
CRR073318Tawny withering 1181.203
CRR073319Tawny withering 2207.414
CRR073320Tawny withering 3178.929