Gene detail

Detail information of GWHGAAZE010133

Functional Annotation

Database	Orthologs	Annotation
Nr	ADD30622.1	photosystem II CP47 chlorophyll apoprotein (chloroplast) [Lonicera japonica]
Swissprot	tr\|A4QKV7\|PSBB_CRUWA	Photosystem II CP47 reaction center protein {ECO:0000255\|HAMAP-Rule:MF_01495}
trEMBL	tr\|D3WBR0\|D3WBR0_LONJA	Photosystem II CP47 reaction center protein {ECO:0000256\|RuleBase:RU004535}
TAIR10	ATCG00680.1	photosystem II reaction center protein B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123748288	123752183	+
GWHAAZE00000002	mRNA	123748288	123752183	+
GWHAAZE00000002	exon	123748288	123749305	+
GWHAAZE00000002	exon	123749396	123749462	+
GWHAAZE00000002	exon	123749544	123749797	+
GWHAAZE00000002	exon	123750199	123750223	+
GWHAAZE00000002	exon	123751520	123752183	+
GWHAAZE00000002	CDS	123748288	123749305	+
GWHAAZE00000002	CDS	123749396	123749462	+
GWHAAZE00000002	CDS	123749544	123749797	+
GWHAAZE00000002	CDS	123750199	123750223	+
GWHAAZE00000002	CDS	123751520	123752183	+

Transcript Sequence
>GWHTAAZE010145 ATGGGTTTGCCTTGGTATCGTGTTCATACCGTTGTATTGAATGATCCCGGTCGACTGCTTTCTGTCCATATAATGCATACAGCTCTGGTTGCGGGTTGGGCCGGTTCTATGGCTCTGTATGAATTAGCAGTTTTTGATCCCTCTGACCCCGTTCTTGATCCAATGTGGAGACAGGGTATGTTCGTTATACCATTCATGACTCGTTTAGGAATAACCAATTCATGGGGTGGTTGGGGTATCACAGGGGGGACTATAACGAATCCAGGTATTTGGAGTTACGAAGGTGTGGCCGGGGCACATATTGTGTTTTCTGGCTTGTGCTTCTTGGCAGCTATCTGGCATTGGGTATATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTACCCAAAATCTTTGGAATTCATTTATTTCTCGCAGGAGTGGCGTGCTTTGGTTTTGGTGCATTTCATGTAACAGGCTTGTATGGTCCTGGAATATGGGTGTCCGATCCTTATGGACTGACGGGAAAAGTGCAATCTGTAAATCCAGCCTGGGGCGTGGAAGGTTTTGATCCTTTTGTTCCGGGAGGAATAGCCTCTCATCATATTGCAGCAGGGGCATTGGGCATATTGGCGGGCCTATTCCATCTTAGCGTTCGCCCACCCCAACGCCTATACAAAGGATTGCGTATGGGCAATATTGAAACCGTCCTTTCCAGTAGTATTGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCCGGAACTATGTGGTATGGTTCAGCAACTACTCCGATCGAATTGTTTGGGCCTACTCGTTATCAATGGGATCAGGGGTACTTTCAGCAAGAGATATACCGAAGGGTTAGTGCTGGACTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCCGAAAAATTGGCTTTTTATGATTACATCGGCAATAATCCGGCAAAAGGGGGATTATTCAGGGCGGGCTCAATGGATAACGGGGATGGAATAGCCGTTGATGACGGCGACGGAATTGTTAGAGCCGATGTTCCTTTCGAAGGGCCGAATCGAAGTATAGTGTCGAACAAACGTGCTCAATTGGGTGAAATTTTTGAGTTAGATCGTGCTACTTTGAAATCCGATGGTGTTTTTCGTAGCAGTCCGAGAGGTTGGTTTACTTTTGGACATGCTTCATTTGCTTTGCTCTTTTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTTTTTGCTGGTATTGACCCAGATTTGGATGCTCAAGTAGAATTTGGAGCATTCCAAAAAACTTGGAGATCCAACTACAAGAAGACAGGTGTTGAGAAGGTTGCCCAAAAGCGGGGGAGTCCCGCCTATCTCAATAAAGTTTATGATTGGTTTGAAGAACGTCTCGAGATTCAGGCAATTGCGGATGATATAACTAGTAAATATGTTCCTCCCCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTGGTACAAGTGGCTACGGGGTTTGCTATGACTTTTTACTATCGTCCGACCGTTACTGACGCTTTTGCTTCTGTTCAATACATAATGACTGAAGCTAATTTTGGTTGGTTAATCCGATCTGTTCATCGATGGTCGGCAAGTATGATGGTTCTAATGATGATCTTACACGTATTTCGCGTGTATCTCACCGGTGGATTTAAAAAACCTCGAGAATTGACTTGGGTTACTGGGGTGGTTCTGGCTGTATTGACCGCATCTTTTGGCGTAACCGGTTATTCCTTACCTTGGGACCAAATTGGTTATTGGGCAGTGAAAATTGTAACAGGTGTCCCTGAAGCTATTCCTGTAATAGGACCTCCTTTGGTAGAATTATTGCGCGGGAGTGCTAGTGTGGGACAATCCACTTTGACTCGGTTTTATAGTTTACACACTTTTGTATTACCACTTCTTACTGCGGTATTTATGTTAATGCACTTTCCGATGATACGTAAACAAGGCATTTCTGGTCCTTTATAG

Network for GWHGAAZE010133

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00421.20	PSII	1	338	7.40E-179
PF00421.20	PSII	361	437	8.00E-33
PF00033.20	Cytochrome_B	482	670	1.00E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02704	psbB	Metabolic pathways	map01100
K02704	psbB	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0009767	biological_process	photosynthetic electron transport chain
GO:0019684	biological_process	photosynthesis, light reaction
GO:0009772	biological_process	photosynthetic electron transport in photosystem II
GO:0015979	biological_process	photosynthesis
GO:0022904	biological_process	respiratory electron transport chain
GO:0016020	cellular_component	membrane
GO:0009521	cellular_component	photosystem
GO:0009523	cellular_component	photosystem II
GO:0009055	molecular_function	electron transfer activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0016168	molecular_function	chlorophyll binding
GO:0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.680
	SRR3591706	second leaf	2.645
	SRR3591707	mature leaf	3.210
	SRR3591708	Shoot apex	3.017
	SRR3591709	Stem	0.441
	SRR3591710	White floral bud	0.782
	SRR3591711	White flower	0.365
	SRR3591712	Green floral bud	0.602
	SRR3591713	Yellow flower	0.409
SRP173429	SRR8316895	Juvenile bud stage	17.072
	SRR8316896	Juvenile bud stage	6.032
	SRR8316897	Juvenile bud stage	23.898
	SRR8316894	Third green stage	24.013
	SRR8316900	Third green stage	1.742
	SRR8316901	Third green stage	1.523
	SRR8316898	Complete white stage	7.651
	SRR8316899	Complete white stage	0.297
	SRR8316903	Complete white stage	6.892
	SRR8316902	Silver flowering stage	8.582
	SRR8316904	Silver flowering stage	8.619
	SRR8316905	Silver flowering stage	6.939
	SRR8316906	Gold flowering stage	0.557
	SRR8316907	Gold flowering stage	0.212
	SRR8316908	Gold flowering stage	0.534
SRP132670	SRR6706286	Control	0.439
	SRR6706287	Light intensity 50%	0.593
	SRR6706288	Light intensity 20%	0.471
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.617
	CNS0095593	Slightly white alabastrum(diploid) 2	4.904
	CNS0095594	Slightly white alabastrum(diploid) 3	6.996
	CNS0095595	Whole white alabastrum(diploid) 2	10.360
	CNS0095596	Whole white alabastrum(diploid) 3	6.714
	CNS0095597	Whole white alabastrum(diploid) 4	6.840
	CNS0095598	Silvery flower (diploied) 1	5.353
	CNS0095599	Silvery flower (diploied) 2	5.354
	CNS0095600	Silvery flower (diploied) 3	1.950
	CNS0095601	Golden flower (diploid) 1	5.328
	CNS0095602	Golden flower (diploid) 2	1.537
	CNS0095603	Golden flower (diploid) 3	1.900
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.029
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.215
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.057
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.148
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.857
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.650
	CNS0095610	Silvery flower (tetraploid) 1	2.133
	CNS0095611	Silvery flower (tetraploid) 2	2.609
	CNS0095612	Silvery flower (tetraploid) 3	2.651
	CNS0095613	Golden flower (tetraploid) 1	6.691
	CNS0095614	Golden flower (tetraploid) 2	2.642
	CNS0095615	Golden flower (tetraploid) 3	1.705
CRA001975	CRR073297	Stem 1	6.048
	CRR073298	Stem 2	7.420
	CRR073299	Stem 3	2.853
	CRR073300	Leaf 1	2.562
	CRR073301	Leaf 2	3.461
	CRR073302	Leaf 3	2.120
	CRR073303	Juvenile bud 1	3.508
	CRR073304	Juvenile bud 2	2.633
	CRR073305	Juvenile bud 3	6.655
	CRR073306	Third green 1	3.007
	CRR073307	Third green 2	1.904
	CRR073308	Third green 3	4.326
	CRR073309	Second white 1	3.000
	CRR073310	Second white 2	9.397
	CRR073311	Second white 3	15.475
	CRR073312	Silver flowering 1	13.387
	CRR073313	Silver flowering 2	3.888
	CRR073314	Silver flowering 3	7.938
	CRR073315	Gold flowering 1	58.024
	CRR073316	Gold flowering 2	44.423
	CRR073317	Gold flowering 3	82.581
	CRR073318	Tawny withering 1	3.931
	CRR073319	Tawny withering 2	4.268
	CRR073320	Tawny withering 3	3.282