Detail information of GWHGAAZE010123


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD29919.15.6691E-140ribosomal protein S4 (chloroplast) [Lonicera japonica]
Swissprottr|Q68S04|RR4_PANGI1E-12530S ribosomal protein S4, chloroplastic
trEMBLtr|D3WBU7|D3WBU7_LONJA2E-14030S ribosomal protein S4, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01306}
TAIR10ATCG00380.17E-91chloroplast ribosomal protein S4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123720441123721034-
GWHAAZE00000002mRNA123720441123721034-
GWHAAZE00000002exon123720441123721034-
GWHAAZE00000002CDS123720441123721034-
Transcript Sequence

Network for GWHGAAZE010123

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0205GO:0006412 translation GOslim:biological_process
map03010 Ribosome
GO:0015935 small ribosomal subunit GOslim:cellular_component
GO:0003735 structural constituent of ribosome GOslim:molecular_function
GO:0015934 large ribosomal subunit GOslim:cellular_component
GO:0019843 rRNA binding GOslim:molecular_function
map03010 Ribosome
GO:0003723 RNA binding GOslim:molecular_function
map03020 RNA polymerase
GO:0006351 transcription, DNA-templated GOslim:biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00163.20Ribosomal_S43826.00E-21
PF01479.26S4831304.60E-19
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02986RP-S4, rpsD Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003723molecular_functionRNA binding
GO:0019843molecular_functionrRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.386
SRR3591706second leaf1.284
SRR3591707mature leaf0.251
SRR3591708Shoot apex1.471
SRR3591709Stem0.356
SRR3591710White floral bud0.102
SRR3591711White flower0.178
SRR3591712Green floral bud0.569
SRR3591713Yellow flower0.466
SRP173429 SRR8316895Juvenile bud stage 5.524
SRR8316896Juvenile bud stage 2.679
SRR8316897Juvenile bud stage 8.688
SRR8316894Third green stage 7.022
SRR8316900Third green stage 2.435
SRR8316901Third green stage 1.659
SRR8316898Complete white stage 3.488
SRR8316899Complete white stage 1.384
SRR8316903Complete white stage 2.560
SRR8316902Silver flowering stage4.968
SRR8316904Silver flowering stage4.783
SRR8316905Silver flowering stage4.174
SRR8316906Gold flowering stage 1.668
SRR8316907Gold flowering stage 1.443
SRR8316908Gold flowering stage 1.551
SRP132670SRR6706286Control0.529
SRR6706287Light intensity 50%0.521
SRR6706288Light intensity 20%0.383
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.186
CNS0095593Slightly white alabastrum(diploid) 217.649
CNS0095594Slightly white alabastrum(diploid) 326.899
CNS0095595Whole white alabastrum(diploid) 220.034
CNS0095596Whole white alabastrum(diploid) 313.304
CNS0095597Whole white alabastrum(diploid) 421.534
CNS0095598Silvery flower (diploied) 112.693
CNS0095599Silvery flower (diploied) 211.974
CNS0095600Silvery flower (diploied) 33.091
CNS0095601Golden flower (diploid) 113.515
CNS0095602Golden flower (diploid) 22.983
CNS0095603Golden flower (diploid) 32.552
CNS0095604Slightly white alabastrum(tetraploid) 19.670
CNS0095605Slightly white alabastrum(tetraploid) 213.126
CNS0095606Slightly white alabastrum(tetraploid) 34.488
CNS0095607Whole white alabastrum(tetraploid) 111.551
CNS0095608Whole white alabastrum(tetraploid) 217.226
CNS0095609Whole white alabastrum(tetraploid) 32.366
CNS0095610Silvery flower (tetraploid) 12.529
CNS0095611Silvery flower (tetraploid) 22.220
CNS0095612Silvery flower (tetraploid) 31.955
CNS0095613Golden flower (tetraploid) 15.387
CNS0095614Golden flower (tetraploid) 22.445
CNS0095615Golden flower (tetraploid) 32.364
CRA001975CRR073297Stem 13.922
CRR073298Stem 25.938
CRR073299Stem 31.524
CRR073300Leaf 13.463
CRR073301Leaf 22.837
CRR073302Leaf 31.902
CRR073303Juvenile bud 14.618
CRR073304Juvenile bud 22.112
CRR073305Juvenile bud 35.206
CRR073306Third green 13.083
CRR073307Third green 21.318
CRR073308Third green 34.096
CRR073309Second white 15.656
CRR073310Second white 26.958
CRR073311Second white 35.704
CRR073312Silver flowering 15.977
CRR073313Silver flowering 20.465
CRR073314Silver flowering 32.774
CRR073315Gold flowering 117.528
CRR073316Gold flowering 218.755
CRR073317Gold flowering 313.835
CRR073318Tawny withering 12.504
CRR073319Tawny withering 25.988
CRR073320Tawny withering 32.053