Gene detail

Detail information of GWHGAAZE010121

Functional Annotation

Database	Orthologs	Annotation
Nr	ADD30821.1	photosystem I P700 apoprotein A1 (chloroplast) [Lonicera japonica]
Swissprot	tr\|Q68S06\|PSAA_PANGI	Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000255\|HAMAP-Rule:MF_00458}
trEMBL	tr\|D3WBQ4\|D3WBQ4_LONJA	Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000256\|HAMAP-Rule:MF_00458}
TAIR10	ATCG00350.1	Photosystem I, PsaA/PsaB protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123712370	123716901	-
GWHAAZE00000002	mRNA	123712370	123716901	-
GWHAAZE00000002	exon	123714889	123716901	-
GWHAAZE00000002	exon	123714204	123714592	-
GWHAAZE00000002	exon	123714023	123714117	-
GWHAAZE00000002	exon	123712966	123713891	-
GWHAAZE00000002	exon	123712370	123712558	-
GWHAAZE00000002	CDS	123714889	123716901	-
GWHAAZE00000002	CDS	123714204	123714592	-
GWHAAZE00000002	CDS	123714023	123714117	-
GWHAAZE00000002	CDS	123712966	123713891	-
GWHAAZE00000002	CDS	123712370	123712558	-

Transcript Sequence
>GWHTAAZE010133 ATGTTGGCGGGTTTCTTTGTATGTGTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCGCCGGAACCAGAAGTCAAAATTTTGGTAGATAGGGATCACATAAAAACTTCTTTCGAGGAATGGGCCAAACCCGGTCATTTCTCAAGAACAATAGCTAAAGGCCCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGCCATACCGGTGATTTGGAGGAGATCTCTCGAAAAGTATTTAGTGCCCATTTCGGTCAACTCTCCATCATCTTTCTTTGGCTGAGTGGCATGTATTTCCACGGTGCTCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCGACTCACATTGGGCCGAGTGCCCAGGTGGTTTGGCCAATAGTGGGCCAAGAGATATTGAACGGTGATGTGGGCGGGGGCTTCCGAGGAATACAAATAACCTCGGGTTTCTTTCAGCTTTGGCGAGCATCTGGAATAACTAGCGAATTACAACTCTATTGTACCGCAATTGGTGCATTGATCTTTGCAGCGTTAATGCTTTTTGCTGGTTGGTTTCATTATCATAAAGCTGCTCCAAAATTGGCTTGGTTTCAAGATGTAGAATCGATGTTGAATCACCATTTAGCGGGGTTACTAGGACTTGGGTCTCTCTCTTGGGCGGGGCATCAAGTCCATGTATCTTTACCGATTAACCAATTTCTAAATGCTGGGGTAGATCCTAAAGAGATACCACTGCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCTCAACTTTATCCCAGTTTTGCCGAGGGAGCAACCCCTTTTTTCACCTTGAATTGGTCAAAATACGCAGACTTTCTTACTTTTCGTGGAGGATTAGATCCAGTAACTGGAGGTCTATGGCTGACCGATATTGCACACCATCATTTAGCTATTGCAATTCTTTTCCTGATAGCAGGTCATATGTATCGGACCAACTGGGGCATTGGTCATGGCCTAAAAGATATTTTAGAAGCTCATAAGGGTCCATTTACAGGCCAGGGCCATAAAGGCCTATATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCGATGCTAGGCTCTTTAACCATTGTTGTAGCTCATCATATGTATTCCATGCCCCCTTATCCATATCTAGCTACTGACTATGGTACACAACTGTCATTGTTTACACATCACATGTGGATTGGTGGATTTCTCATAGTTGGGGCTGCTGCGCATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACTACTCGATATAACGATCTATTAGATCGTGTCCTTAGGCATCGCGATGCTATCATATCACATCTCAACTGGGCATGTATATTTCTAGGTTTTCACAGTTTTGGTTTGTATATTCATAATGATACTATGAGCGCTTTAGGGCGCCCTCAAGATATGTTTTCAGATACCGCTATTCAATTACAACCCGTCTTTGCTCAATGGATCCAAAACACCCATGCTTTAGCACCCGGTGCAACGGCTCCTGGTGCAACAACAAGCACCAGTTTAACTTGGGGGGGCGGTGATTTAGTAGCAGTGGGTGGCAAAGTGGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTGGTACATCACATTCATGCATTTACGATTCATGTGACCGTATTGATACTCCTGAAAGGTGTTCTATTTGCTCGTAGTTCCCGTTTGATACCGGATAAAGCAAATCTTGGTTTTCGTTTTCCTTGTGATGGACCTGGAAGAGGAGGGACGTGTCAAGTATCGGCTTGGGATCATGTCTTCTTAGGACTGTTCTGGATGTACAATGCAATTTCAGTAGTAATTTTCCATTTCAGTTGGAAAATGCAGTCAGATGTTTGGGGCAGTATAAGTGATCAAGGGGTAGTAACTCATATCACGGGAGGAAATTTTGCGCAGAGTTCCATTACTATTAATGGGTGGCTTCGCGATTTCTTATGGGCACAAGCATCCCAGGAGGATTTGAAAGGCATTATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCCCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTCGGGCAATTAGCAATAATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGGAATTTTGAGTCATGGGTACAGGACCCTTTACATGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCTGTAGAAGCTTTTACTCGAGGAGGTGCTCTTGGCCCAGTGAATATCGCCTATTCCGGTGTTTATCAGTGGTGGTTGGTTACACCTACAACCGAAATGGAAACCAAGCGTTTCATGGTTCAAAAATGCGGAATCTCGTCTCAATCATCATTTGTCAGGACTCTTCGGCGTCAGTGGAATCTTTATGCTCAAAATCCCGATTCAACTAGTCATTTATTTGGTACCTCCCAAGGAGCAGGAACTGCTATTCTAACCCTTCTCGGGGGATTTCATCCACAAACGCAAAGTTTATGGCTGACTGATATGGCTCATCATCATTTAGCTATTGCATTTATTTTTCTCGTTGCAGGGCATATGTATAGAACTAACTTCGGGATTGGGCACAGTATGAAAGATCTTTTAGATGTGCATCTTCCCCCCGGGGGGCGATTGGGACGTGGGCATAGGGGTCTTTATGACACAATCAATAATTCGATTCATTTTCAATTAGGCCTTGCCCTAGCTTCTTTAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCGTTATATACTCATCACCAATACATCGCAGGATTCATCATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTCATTAGAGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCCAGCCTCTTTCTGGGGTTCCATACTTTGGGACTTTATGTTCATAATGATGTCATGCTTGCCTTTGGTACTCCGGAGAAACAAATCTTGATCGAACCTATATTTGCTCAATGGATACAATCTGCTCATGGTAAAACTTCCTATGGGTTCGATGTACTTTTATCTTCAACGAACGGCCCGGCATTCAATGCTGGTCGAAGCATATGGTTGCCGGGTTGGTTAAATGCTATTAATGAGAATAGTAATTCACTATTCTTAACAATAGGTCCCGGAGACTTTTTGGTTCATCATGCTATTGCTCTGGGTTTACATACAACTACATTGATCTTAGTAAAGGAATTGATTGAAACTTTAACATGGGCTCATGAGCGTACACCTTTGGCCAATTTGATTCGTTGGAGAGATAAACCGGTGGCCCTTTCTATTGTACAAGCACGATTGGTTGGATTAGCCCACTTTTCTGTAGGTTATATATTCACTTATGCAGCTTTCTTGATTGCCTCTACATCAGGCAAATTTGGTTAA

Network for GWHGAAZE010121

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00223.20	PsaA_PsaB	48	671	0
PF00223.20	PsaA_PsaB	685	806	2.60E-50
PF00223.20	PsaA_PsaB	827	1141	1.10E-136
PF00223.20	PsaA_PsaB	1141	1196	9.40E-19

Protein Sequence

>GWHPAAZE010127
MLAGFFVCVVRKEEDSMIIRSPEPEVKILVDRDHIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTGDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLYCTAIGALIFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNWSKYADFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGLKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIVVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNDLLDRVLRHRDAIISHLNWACIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQNTHALAPGATAPGATTSTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQEDLKGIMALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWLVTPTTEMETKRFMVQKCGISSQSSFVRTLRRQWNLYAQNPDSTSHLFGTSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFIFLVAGHMYRTNFGIGHSMKDLLDVHLPPGGRLGRGHRGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSSTNGPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKELIETLTWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02689	psaA	Metabolic pathways	map01100
K02689	psaA	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0015979	biological_process	photosynthesis
GO:0009522	cellular_component	photosystem I
GO:0009579	cellular_component	thylakoid
GO:0016021	cellular_component	integral component of membrane
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.535
	SRR3591706	second leaf	2.369
	SRR3591707	mature leaf	2.258
	SRR3591708	Shoot apex	4.624
	SRR3591709	Stem	0.681
	SRR3591710	White floral bud	0.375
	SRR3591711	White flower	0.520
	SRR3591712	Green floral bud	0.568
	SRR3591713	Yellow flower	0.655
SRP173429	SRR8316895	Juvenile bud stage	25.686
	SRR8316896	Juvenile bud stage	10.428
	SRR8316897	Juvenile bud stage	34.101
	SRR8316894	Third green stage	37.152
	SRR8316900	Third green stage	2.634
	SRR8316901	Third green stage	2.123
	SRR8316898	Complete white stage	7.754
	SRR8316899	Complete white stage	0.473
	SRR8316903	Complete white stage	9.630
	SRR8316902	Silver flowering stage	13.716
	SRR8316904	Silver flowering stage	13.230
	SRR8316905	Silver flowering stage	12.159
	SRR8316906	Gold flowering stage	0.427
	SRR8316907	Gold flowering stage	0.357
	SRR8316908	Gold flowering stage	0.336
SRP132670	SRR6706286	Control	0.769
	SRR6706287	Light intensity 50%	0.846
	SRR6706288	Light intensity 20%	0.572
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.873
	CNS0095593	Slightly white alabastrum(diploid) 2	6.964
	CNS0095594	Slightly white alabastrum(diploid) 3	9.052
	CNS0095595	Whole white alabastrum(diploid) 2	12.641
	CNS0095596	Whole white alabastrum(diploid) 3	7.909
	CNS0095597	Whole white alabastrum(diploid) 4	10.227
	CNS0095598	Silvery flower (diploied) 1	9.270
	CNS0095599	Silvery flower (diploied) 2	11.341
	CNS0095600	Silvery flower (diploied) 3	4.876
	CNS0095601	Golden flower (diploid) 1	11.937
	CNS0095602	Golden flower (diploid) 2	3.566
	CNS0095603	Golden flower (diploid) 3	4.729
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.148
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.814
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.295
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.558
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.807
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.446
	CNS0095610	Silvery flower (tetraploid) 1	3.477
	CNS0095611	Silvery flower (tetraploid) 2	4.987
	CNS0095612	Silvery flower (tetraploid) 3	3.055
	CNS0095613	Golden flower (tetraploid) 1	7.934
	CNS0095614	Golden flower (tetraploid) 2	3.564
	CNS0095615	Golden flower (tetraploid) 3	1.870
CRA001975	CRR073297	Stem 1	6.730
	CRR073298	Stem 2	8.483
	CRR073299	Stem 3	2.579
	CRR073300	Leaf 1	1.821
	CRR073301	Leaf 2	2.353
	CRR073302	Leaf 3	1.893
	CRR073303	Juvenile bud 1	5.326
	CRR073304	Juvenile bud 2	3.440
	CRR073305	Juvenile bud 3	9.812
	CRR073306	Third green 1	4.494
	CRR073307	Third green 2	2.361
	CRR073308	Third green 3	5.205
	CRR073309	Second white 1	7.335
	CRR073310	Second white 2	17.656
	CRR073311	Second white 3	47.886
	CRR073312	Silver flowering 1	34.914
	CRR073313	Silver flowering 2	7.750
	CRR073314	Silver flowering 3	19.902
	CRR073315	Gold flowering 1	30.472
	CRR073316	Gold flowering 2	28.924
	CRR073317	Gold flowering 3	47.956
	CRR073318	Tawny withering 1	6.191
	CRR073319	Tawny withering 2	4.220
	CRR073320	Tawny withering 3	4.488