Gene detail

Detail information of GWHGAAZE010119

Functional Annotation

Database	Orthologs	Annotation
Nr	ADD31191.1	RNA polymerase beta subunit protein (chloroplast) [Lonicera japonica]
Swissprot	tr\|Q68S14\|RPOB_PANGI	DNA-directed RNA polymerase subunit beta {ECO:0000255\|HAMAP-Rule:MF_01321}
trEMBL	tr\|D3WBT5\|D3WBT5_LONJA	DNA-directed RNA polymerase subunit beta {ECO:0000256\|HAMAP-Rule:MF_01321}
TAIR10	ATCG00190.1	RNA polymerase subunit beta

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123697895	123700819	-
GWHAAZE00000002	mRNA	123697895	123700819	-
GWHAAZE00000002	exon	123697895	123700819	-
GWHAAZE00000002	CDS	123697895	123700819	-

Transcript Sequence
>GWHTAAZE010131 ATGCAAGAACAAACAATTTTCATTGGAAACATTCCTCTAATGAATTCTCTGGGAACTTCTATAGTAAAGGGAATATATAGAATTGTGATCAATCAAATATTGCAAAGCCCGGGTATTTATTACCGGTCAGAATTGGACCATAATGGAATTGAGGCCTATACCGGCACCATAATATCAGATTGGGGAGGAAGATCAGGATTAGAGATTGATAGAAAAGCAAGGATATGGGCTCGCGTGAGTAGGAAACAAAAAATATCTATCCTAGTTTTATCATCAGCTATGGGTTCGAATCTACGAGAAATTCTGGAGAATGTTTGCTATCCCGAAATATTTTTGTCTTTTCTGAATGCTAAGGAGAAAAAAAAAATTGGGTCAAAAGAAAATGCTATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGCGGAGATCCGGTATTTTCTGAATCCTTATCTAAGGAATTACAAAAGAAATTCTTTCAACAAAAATGTGAATTAGGAAGGATTGGGCGGCGAAATATGAATCGGAGACTGAACCTTGATATACCCCAGAACAATACATTTTTGTTACCACGAGATATATTGGCAGCCGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTCCACTTGACGATATGAATCATTTGAAAAATAAACGTATTCGTTCTGTAGCAGATCTTTTACAAGATCAATTCGGATTGGCTCTGTCTCGTTTAGAAAATGTGATTCGAGGAACTATATCTGGAGCACTTAGACATAAATTGATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACTACTTATGAATCTTTTTTCAGTTTACACCCATTATCTCAAGTTTTGGATCGAACTAATCCATTAACACAAATAGTTCATGGTAGAAAATTGAGTTATTTGGGCCCTGGAGGATTGACAGGGCGAACTGCTAGTTTTCGAATACGAGATATCCATCCTAGTTACTATGGACGTATTTGCCCAATTGACACATCTGAAGGAATAAATGTTGGACTTATTGGATCCTTAGCAATTCATGCGAGGATTGGTCGTTGGGGGTCTCTAGAAAGCCCATTTTATGAAATTTCTGAGAAACCGAAAGGGGCACGGATGCTTTATTTATCACCAGGTCGAGATGAATACTCTATGGTAGCTGCAGGCAATTCTTTGGCCTTGAATCAGAGTATTCAGGAGGAACAGGTTGTTCCAGCTCGATACCGTCAAGAATTCCTGACTGTTGCATGGGAACAAGTTCATCTTCGAAGTATTTTTTCCTTCCAATATTTTTCTATTGGAGCTTCCCTCATTCCTTTTATCGAGCATAATGATGCGAATCGGGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCTCTTTCTCGGTCCGAGAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGCAGCTCTGGATTCGGGGGCTCTTGCTATAGCCAAACACGAGGGAAAGATCAGTTATATCGATACGGACAAGATACTTTTATCAAGTAATAGAGATACTCTAAGCATTATGGGTCGGGGTTCCAACAAAAAGACTTGTATGCATCAAAAACCCCAGGTTCGGCGGGTTAAATGCATTAAAAAGGGACAAATTTTAGGGTATGGCGCCGCTACGGTTGGTGGTGAACTCGCTTTGGGGAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCAGTACTCATTAGCGAGCGCTTGGTATATGAAGATATTTATACTTCTTTTCACATACGGAAATATGAAACTAAGATTTGTGTGACAAGCCAAGGCCCCGAAAGGGTCACTAATGAAATACCGCATTTAGAAGCCCATTTACTCCGCAATTTAGACAAAAGGGGAATTGTAATGCTGGGATCTTGGGTAGAGGCGGGTGATATTTTAGTAGGTAAATTAACGCCCAAAATTGTCAAAGAATCGTCGTCTGCCCCCGAAGCTAGATTGTTACGAGCCATACTCGGCATTCAGGCAGCTACTTCAAAGGAAACTTGTCTAAAACTACCTATAGGTGGTAGGGGTCGGGTTATTGATGTGAGATGGATCCAGCAAAATGAGGTTTCTGGTTCTAATCCAGAAAGGATTTGTGTATCTATTTTACAGAAACGTGAAATCAAAGTAGGCGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCATTTCCAAAATTTTGCCTAGACAAGATATGCCTTATTTGCAAGATGGAAGACCTGTTGATATGGTCTTCAACCCATTAGGAGTCCCTTCACGAATGAATGTAGGACAGATATTTGAATGTTCACTCGGGTTAGCGGGGGATCTGCTAAACAGACATTATCGAATAGCGCCTTTTGATGAGAGATATGAACAAGAAGCTTCGAGAAAACTTGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCAAATCCATGGGTATTTGAACCCGAGTATCCAGGAAAAAGCAGAATATTTGATGGACGAACGGGGGATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTACATCTTGAAATTAATTCATCAAGTTGATGATAAAATCCATGGACGTTCCAGCGGACAGTATGCCGTTGTTACACAACAAGCCGTTAGAGGAAGGTCCAGGGGAGGGGGACAACGGGTAGGAGAAATGGAGGTTTGGGCTCTAGAGGGATTTGGCGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATGAGAGCCCGACAGGGAATACTTGGTACTACACTCATCGGAGGAACAATACCTAATCCTGAGGGTGCTCCAGAATCTTTTCGATTGCTCGTTCGAGAACTACGATCTTTGGCTCTGGAATTGAATCATTTCCTTGTATCTGAGAAGAATTTCCAGATTCATAGGGAGGAAGCTTAA

Network for GWHGAAZE010119

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04561.15	RNA_pol_Rpb2_2	36	222	1.90E-52
PF04565.17	RNA_pol_Rpb2_3	283	351	2.30E-23
PF00562.29	RNA_pol_Rpb2_6	488	883	3.20E-115
PF04560.21	RNA_pol_Rpb2_7	885	960	8.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03043	rpoB	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
GO:0032549	molecular_function	ribonucleoside binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.041
	SRR3591706	second leaf	0.049
	SRR3591707	mature leaf	0.085
	SRR3591708	Shoot apex	0.309
	SRR3591709	Stem	0.013
	SRR3591710	White floral bud	0.032
	SRR3591711	White flower	0.066
	SRR3591712	Green floral bud	0.115
	SRR3591713	Yellow flower	0.047
SRP173429	SRR8316895	Juvenile bud stage	0.964
	SRR8316896	Juvenile bud stage	0.408
	SRR8316897	Juvenile bud stage	1.980
	SRR8316894	Third green stage	2.011
	SRR8316900	Third green stage	0.350
	SRR8316901	Third green stage	0.291
	SRR8316898	Complete white stage	0.506
	SRR8316899	Complete white stage	0.135
	SRR8316903	Complete white stage	0.513
	SRR8316902	Silver flowering stage	0.886
	SRR8316904	Silver flowering stage	0.814
	SRR8316905	Silver flowering stage	0.764
	SRR8316906	Gold flowering stage	0.181
	SRR8316907	Gold flowering stage	0.334
	SRR8316908	Gold flowering stage	0.184
SRP132670	SRR6706286	Control	0.080
	SRR6706287	Light intensity 50%	0.100
	SRR6706288	Light intensity 20%	0.115
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.984
	CNS0095593	Slightly white alabastrum(diploid) 2	0.749
	CNS0095594	Slightly white alabastrum(diploid) 3	0.939
	CNS0095595	Whole white alabastrum(diploid) 2	1.092
	CNS0095596	Whole white alabastrum(diploid) 3	0.809
	CNS0095597	Whole white alabastrum(diploid) 4	1.303
	CNS0095598	Silvery flower (diploied) 1	0.587
	CNS0095599	Silvery flower (diploied) 2	0.621
	CNS0095600	Silvery flower (diploied) 3	0.627
	CNS0095601	Golden flower (diploid) 1	0.937
	CNS0095602	Golden flower (diploid) 2	0.403
	CNS0095603	Golden flower (diploid) 3	0.429
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.655
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.315
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.620
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.752
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.436
	CNS0095610	Silvery flower (tetraploid) 1	0.501
	CNS0095611	Silvery flower (tetraploid) 2	0.535
	CNS0095612	Silvery flower (tetraploid) 3	0.406
	CNS0095613	Golden flower (tetraploid) 1	0.737
	CNS0095614	Golden flower (tetraploid) 2	0.666
	CNS0095615	Golden flower (tetraploid) 3	0.176
CRA001975	CRR073297	Stem 1	0.437
	CRR073298	Stem 2	0.454
	CRR073299	Stem 3	0.136
	CRR073300	Leaf 1	0.326
	CRR073301	Leaf 2	0.247
	CRR073302	Leaf 3	0.340
	CRR073303	Juvenile bud 1	0.519
	CRR073304	Juvenile bud 2	0.254
	CRR073305	Juvenile bud 3	0.670
	CRR073306	Third green 1	0.392
	CRR073307	Third green 2	0.167
	CRR073308	Third green 3	0.366
	CRR073309	Second white 1	0.180
	CRR073310	Second white 2	1.426
	CRR073311	Second white 3	2.344
	CRR073312	Silver flowering 1	1.490
	CRR073313	Silver flowering 2	0.401
	CRR073314	Silver flowering 3	0.766
	CRR073315	Gold flowering 1	0.596
	CRR073316	Gold flowering 2	1.289
	CRR073317	Gold flowering 3	0.465
	CRR073318	Tawny withering 1	0.465
	CRR073319	Tawny withering 2	0.341
	CRR073320	Tawny withering 3	0.316