Detail information of GWHGAAZE010118


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31154.10RNA polymerase beta'' subunit protein (chloroplast) [Lonicera japonica]
Swissprottr|Q33C48|RPOC2_NICTO0DNA-directed RNA polymerase subunit beta'' {ECO:0000255|HAMAP-Rule:MF_01324}
trEMBLtr|D3WBT7|D3WBT7_LONJA0DNA-directed RNA polymerase subunit beta'' {ECO:0000256|HAMAP-Rule:MF_01324}
TAIR10ATCG00170.10DNA-directed RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123693487123696598-
GWHAAZE00000002mRNA123693487123696598-
GWHAAZE00000002exon123693487123694890-
GWHAAZE00000002exon123695510123696598-
GWHAAZE00000002CDS123695510123696598-
GWHAAZE00000002CDS123693487123694890-
Transcript Sequence

Network for GWHGAAZE010118

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04997.13RNA_pol_Rpb1_1862053.90E-29
PF00623.21RNA_pol_Rpb1_22072589.50E-08
PF00623.21RNA_pol_Rpb1_22593477.30E-27
PF05000.18RNA_pol_Rpb1_44635252.70E-10
PF04998.18RNA_pol_Rpb1_55407321.40E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03046rpoC RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.047
SRR3591706second leaf0.068
SRR3591707mature leaf0.100
SRR3591708Shoot apex0.284
SRR3591709Stem0.038
SRR3591710White floral bud0.087
SRR3591711White flower0.111
SRR3591712Green floral bud0.177
SRR3591713Yellow flower0.124
SRP173429 SRR8316895Juvenile bud stage 1.356
SRR8316896Juvenile bud stage 0.736
SRR8316897Juvenile bud stage 2.387
SRR8316894Third green stage 2.662
SRR8316900Third green stage 0.695
SRR8316901Third green stage 0.404
SRR8316898Complete white stage 0.593
SRR8316899Complete white stage 0.162
SRR8316903Complete white stage 0.839
SRR8316902Silver flowering stage1.306
SRR8316904Silver flowering stage0.915
SRR8316905Silver flowering stage0.887
SRR8316906Gold flowering stage 0.154
SRR8316907Gold flowering stage 0.028
SRR8316908Gold flowering stage 0.083
SRP132670SRR6706286Control0.094
SRR6706287Light intensity 50%0.167
SRR6706288Light intensity 20%0.116
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.565
CNS0095593Slightly white alabastrum(diploid) 20.444
CNS0095594Slightly white alabastrum(diploid) 30.759
CNS0095595Whole white alabastrum(diploid) 21.588
CNS0095596Whole white alabastrum(diploid) 31.562
CNS0095597Whole white alabastrum(diploid) 41.482
CNS0095598Silvery flower (diploied) 10.380
CNS0095599Silvery flower (diploied) 20.852
CNS0095600Silvery flower (diploied) 30.755
CNS0095601Golden flower (diploid) 10.784
CNS0095602Golden flower (diploid) 20.418
CNS0095603Golden flower (diploid) 30.614
CNS0095604Slightly white alabastrum(tetraploid) 10.678
CNS0095605Slightly white alabastrum(tetraploid) 20.598
CNS0095606Slightly white alabastrum(tetraploid) 30.427
CNS0095607Whole white alabastrum(tetraploid) 10.608
CNS0095608Whole white alabastrum(tetraploid) 20.958
CNS0095609Whole white alabastrum(tetraploid) 30.531
CNS0095610Silvery flower (tetraploid) 10.564
CNS0095611Silvery flower (tetraploid) 20.709
CNS0095612Silvery flower (tetraploid) 30.409
CNS0095613Golden flower (tetraploid) 10.626
CNS0095614Golden flower (tetraploid) 20.431
CNS0095615Golden flower (tetraploid) 30.139
CRA001975CRR073297Stem 10.821
CRR073298Stem 20.940
CRR073299Stem 30.265
CRR073300Leaf 10.629
CRR073301Leaf 20.489
CRR073302Leaf 30.512
CRR073303Juvenile bud 11.387
CRR073304Juvenile bud 20.587
CRR073305Juvenile bud 31.222
CRR073306Third green 10.824
CRR073307Third green 20.120
CRR073308Third green 30.626
CRR073309Second white 10.644
CRR073310Second white 21.964
CRR073311Second white 33.544
CRR073312Silver flowering 12.475
CRR073313Silver flowering 20.334
CRR073314Silver flowering 31.122
CRR073315Gold flowering 11.130
CRR073316Gold flowering 21.718
CRR073317Gold flowering 31.333
CRR073318Tawny withering 10.459
CRR073319Tawny withering 20.622
CRR073320Tawny withering 30.223