Detail information of GWHGAAZE010116


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31545.14.8607E-136ATP synthase CF0 subunit IV protein (chloroplast) [Lonicera japonica]
Swissprottr|Q68S18|ATPI_PANGI5E-136ATP synthase subunit a, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01393}
trEMBLtr|D3WBN1|D3WBN1_LONJA2E-136ATP synthase subunit a, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU004449}
TAIR10ATCG00150.17E-94ATPase, F0 complex, subunit A protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123688899123691189-
GWHAAZE00000002mRNA123688899123691189-
GWHAAZE00000002exon123690930123691189-
GWHAAZE00000002exon123690427123690551-
GWHAAZE00000002exon123688899123689488-
GWHAAZE00000002CDS123690930123691189-
GWHAAZE00000002CDS123690427123690551-
GWHAAZE00000002CDS123688899123689488-
Transcript Sequence

Network for GWHGAAZE010116

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00318.21Ribosomal_S21011401.70E-09
PF00119.21ATP-synt_A1343161.50E-48
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02108ATPF0A, atpB Metabolic pathways map01100
Oxidative phosphorylationmap00190
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0006412biological_processtranslation
GO:0045263cellular_componentproton-transporting ATP synthase complex, coupling factor F(o)
GO:0005840cellular_componentribosome
GO:0015078molecular_functionproton transmembrane transporter activity
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.775
SRR3591706second leaf1.051
SRR3591707mature leaf1.981
SRR3591708Shoot apex1.227
SRR3591709Stem0.720
SRR3591710White floral bud0.222
SRR3591711White flower0.287
SRR3591712Green floral bud0.514
SRR3591713Yellow flower0.135
SRP173429 SRR8316895Juvenile bud stage 3.421
SRR8316896Juvenile bud stage 1.907
SRR8316897Juvenile bud stage 5.171
SRR8316894Third green stage 4.876
SRR8316900Third green stage 1.629
SRR8316901Third green stage 0.814
SRR8316898Complete white stage 1.199
SRR8316899Complete white stage 0.663
SRR8316903Complete white stage 1.505
SRR8316902Silver flowering stage1.973
SRR8316904Silver flowering stage2.565
SRR8316905Silver flowering stage1.826
SRR8316906Gold flowering stage 0.440
SRR8316907Gold flowering stage 0.262
SRR8316908Gold flowering stage 0.330
SRP132670SRR6706286Control0.247
SRR6706287Light intensity 50%0.268
SRR6706288Light intensity 20%0.302
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.301
CNS0095593Slightly white alabastrum(diploid) 21.254
CNS0095594Slightly white alabastrum(diploid) 31.746
CNS0095595Whole white alabastrum(diploid) 22.699
CNS0095596Whole white alabastrum(diploid) 32.090
CNS0095597Whole white alabastrum(diploid) 43.041
CNS0095598Silvery flower (diploied) 12.373
CNS0095599Silvery flower (diploied) 22.199
CNS0095600Silvery flower (diploied) 31.384
CNS0095601Golden flower (diploid) 11.223
CNS0095602Golden flower (diploid) 20.986
CNS0095603Golden flower (diploid) 31.581
CNS0095604Slightly white alabastrum(tetraploid) 12.778
CNS0095605Slightly white alabastrum(tetraploid) 22.098
CNS0095606Slightly white alabastrum(tetraploid) 31.020
CNS0095607Whole white alabastrum(tetraploid) 12.015
CNS0095608Whole white alabastrum(tetraploid) 22.691
CNS0095609Whole white alabastrum(tetraploid) 31.071
CNS0095610Silvery flower (tetraploid) 11.490
CNS0095611Silvery flower (tetraploid) 21.657
CNS0095612Silvery flower (tetraploid) 31.256
CNS0095613Golden flower (tetraploid) 11.471
CNS0095614Golden flower (tetraploid) 21.542
CNS0095615Golden flower (tetraploid) 31.387
CRA001975CRR073297Stem 10.198
CRR073298Stem 20.690
CRR073299Stem 30.116
CRR073300Leaf 10.417
CRR073301Leaf 20.287
CRR073302Leaf 30.021
CRR073303Juvenile bud 10.218
CRR073304Juvenile bud 20.292
CRR073305Juvenile bud 30.305
CRR073306Third green 10.207
CRR073307Third green 20.120
CRR073308Third green 30.071
CRR073309Second white 10.545
CRR073310Second white 20.983
CRR073311Second white 31.761
CRR073312Silver flowering 11.522
CRR073313Silver flowering 20.667
CRR073314Silver flowering 30.380
CRR073315Gold flowering 14.599
CRR073316Gold flowering 23.478
CRR073317Gold flowering 35.735
CRR073318Tawny withering 10.135
CRR073319Tawny withering 20.693
CRR073320Tawny withering 30.839