Detail information of GWHGAAZE010111


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrYP_009041168.10ribosomal protein subunit S4 (mitochondrion) [Rhazya stricta]
Swissprottr|Q31708|RT04_ARATH0Ribosomal protein S4, mitochondrial
trEMBLtr|A0A060DET1|A0A060DET1_9GENT0Ribosomal protein subunit S4 {ECO:0000313|EMBL:AIB08815.1}
TAIR10ATMG00290.18E-148mitochondrial ribosomal protein S4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123624508123625563-
GWHAAZE00000002mRNA123624508123625563-
GWHAAZE00000002exon123624508123625563-
GWHAAZE00000002CDS123624508123625563-
Transcript Sequence

Network for GWHGAAZE010111

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01479.26S4941381.10E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02986RP-S4, rpsD Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.072
SRR3591707mature leaf0.077
SRR3591708Shoot apex0.721
SRR3591709Stem0.096
SRR3591710White floral bud0.143
SRR3591711White flower0.222
SRR3591712Green floral bud0.279
SRR3591713Yellow flower0.124
SRP173429 SRR8316895Juvenile bud stage 7.855
SRR8316896Juvenile bud stage 3.510
SRR8316897Juvenile bud stage 16.369
SRR8316894Third green stage 15.401
SRR8316900Third green stage 0.762
SRR8316901Third green stage 0.606
SRR8316898Complete white stage 4.254
SRR8316899Complete white stage 0.003
SRR8316903Complete white stage 4.207
SRR8316902Silver flowering stage6.768
SRR8316904Silver flowering stage7.117
SRR8316905Silver flowering stage5.312
SRR8316906Gold flowering stage 0.336
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.118
SRP132670SRR6706286Control0.019
SRR6706287Light intensity 50%0.129
SRR6706288Light intensity 20%0.050
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.141
CNS0095593Slightly white alabastrum(diploid) 22.553
CNS0095594Slightly white alabastrum(diploid) 34.671
CNS0095595Whole white alabastrum(diploid) 25.441
CNS0095596Whole white alabastrum(diploid) 34.167
CNS0095597Whole white alabastrum(diploid) 45.240
CNS0095598Silvery flower (diploied) 13.559
CNS0095599Silvery flower (diploied) 21.986
CNS0095600Silvery flower (diploied) 30.942
CNS0095601Golden flower (diploid) 12.851
CNS0095602Golden flower (diploid) 20.536
CNS0095603Golden flower (diploid) 31.400
CNS0095604Slightly white alabastrum(tetraploid) 13.011
CNS0095605Slightly white alabastrum(tetraploid) 23.878
CNS0095606Slightly white alabastrum(tetraploid) 30.819
CNS0095607Whole white alabastrum(tetraploid) 14.253
CNS0095608Whole white alabastrum(tetraploid) 25.191
CNS0095609Whole white alabastrum(tetraploid) 31.652
CNS0095610Silvery flower (tetraploid) 10.266
CNS0095611Silvery flower (tetraploid) 21.232
CNS0095612Silvery flower (tetraploid) 30.630
CNS0095613Golden flower (tetraploid) 12.946
CNS0095614Golden flower (tetraploid) 21.059
CNS0095615Golden flower (tetraploid) 30.088
CRA001975CRR073297Stem 10.635
CRR073298Stem 20.558
CRR073299Stem 30.083
CRR073300Leaf 10.351
CRR073301Leaf 20.325
CRR073302Leaf 30.144
CRR073303Juvenile bud 10.827
CRR073304Juvenile bud 20.127
CRR073305Juvenile bud 31.171
CRR073306Third green 10.062
CRR073307Third green 20.029
CRR073308Third green 30.498
CRR073309Second white 10.087
CRR073310Second white 21.082
CRR073311Second white 33.358
CRR073312Silver flowering 12.578
CRR073313Silver flowering 20.585
CRR073314Silver flowering 31.523
CRR073315Gold flowering 10.499
CRR073316Gold flowering 20.616
CRR073317Gold flowering 31.340
CRR073318Tawny withering 10.754
CRR073319Tawny withering 20.778
CRR073320Tawny withering 30.748