Detail information of GWHGAAZE010092


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKEH15194.10ATP synthase, F1 beta subunit [Medicago truncatula]
Swissprottr|Q8MBM3|ATPB_CONAR6E-124ATP synthase subunit beta, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01347}
trEMBLtr|A0A072TC88|A0A072TC88_MEDTR0ATP synthase, F1 beta subunit {ECO:0000313|EMBL:KEH15194.1}
TAIR10ATCG00480.13E-100ATP synthase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123349623123350643-
GWHAAZE00000002mRNA123349623123350643-
GWHAAZE00000002exon123349623123349972-
GWHAAZE00000002exon123350085123350643-
GWHAAZE00000002CDS123350085123350643-
GWHAAZE00000002CDS123349623123349972-
Transcript Sequence

Network for GWHGAAZE010092

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00006.26ATP-synt_ab1812.80E-20
PF02823.17ATP-synt_DE_N1772504.40E-19
PF00401.21ATP-synt_DE2552973.10E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02112ATPF1B, atpD Metabolic pathways map01100
Oxidative phosphorylationmap00190
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0045261cellular_componentproton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933molecular_functionproton-transporting ATP synthase activity, rotational mechanism
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE010092.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3024681012141618202224Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.125
SRR3591706second leaf0.386
SRR3591707mature leaf0.742
SRR3591708Shoot apex0.329
SRR3591709Stem0.081
SRR3591710White floral bud0.090
SRR3591711White flower0.085
SRR3591712Green floral bud0.099
SRR3591713Yellow flower0.203
SRP173429 SRR8316895Juvenile bud stage 2.957
SRR8316896Juvenile bud stage 0.892
SRR8316897Juvenile bud stage 4.780
SRR8316894Third green stage 3.640
SRR8316900Third green stage 0.404
SRR8316901Third green stage 0.311
SRR8316898Complete white stage 1.104
SRR8316899Complete white stage 0.178
SRR8316903Complete white stage 0.861
SRR8316902Silver flowering stage1.509
SRR8316904Silver flowering stage1.398
SRR8316905Silver flowering stage1.171
SRR8316906Gold flowering stage 0.210
SRR8316907Gold flowering stage 0.149
SRR8316908Gold flowering stage 0.164
SRP132670SRR6706286Control0.032
SRR6706287Light intensity 50%0.112
SRR6706288Light intensity 20%0.067
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.342
CNS0095593Slightly white alabastrum(diploid) 21.181
CNS0095594Slightly white alabastrum(diploid) 31.390
CNS0095595Whole white alabastrum(diploid) 21.272
CNS0095596Whole white alabastrum(diploid) 31.010
CNS0095597Whole white alabastrum(diploid) 41.277
CNS0095598Silvery flower (diploied) 10.692
CNS0095599Silvery flower (diploied) 20.791
CNS0095600Silvery flower (diploied) 30.353
CNS0095601Golden flower (diploid) 10.847
CNS0095602Golden flower (diploid) 20.396
CNS0095603Golden flower (diploid) 30.468
CNS0095604Slightly white alabastrum(tetraploid) 11.624
CNS0095605Slightly white alabastrum(tetraploid) 21.600
CNS0095606Slightly white alabastrum(tetraploid) 30.586
CNS0095607Whole white alabastrum(tetraploid) 11.096
CNS0095608Whole white alabastrum(tetraploid) 21.068
CNS0095609Whole white alabastrum(tetraploid) 30.476
CNS0095610Silvery flower (tetraploid) 10.314
CNS0095611Silvery flower (tetraploid) 20.457
CNS0095612Silvery flower (tetraploid) 30.332
CNS0095613Golden flower (tetraploid) 10.456
CNS0095614Golden flower (tetraploid) 20.270
CNS0095615Golden flower (tetraploid) 30.316
CRA001975CRR073297Stem 11.746
CRR073298Stem 22.181
CRR073299Stem 30.894
CRR073300Leaf 10.582
CRR073301Leaf 21.177
CRR073302Leaf 30.536
CRR073303Juvenile bud 10.949
CRR073304Juvenile bud 20.620
CRR073305Juvenile bud 31.705
CRR073306Third green 10.806
CRR073307Third green 21.176
CRR073308Third green 30.957
CRR073309Second white 11.391
CRR073310Second white 22.302
CRR073311Second white 33.247
CRR073312Silver flowering 12.196
CRR073313Silver flowering 20.937
CRR073314Silver flowering 30.751
CRR073315Gold flowering 113.343
CRR073316Gold flowering 211.370
CRR073317Gold flowering 321.508
CRR073318Tawny withering 11.064
CRR073319Tawny withering 20.246
CRR073320Tawny withering 30.759