Gene detail

Detail information of GWHGAAZE010079

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	YP_002608370.1	1.3594E-160	ribosomal protein S3 [Vitis vinifera]
Swissprot	tr\|Q04716\|RT03_PETHY	3E-146	Ribosomal protein S3, mitochondrial
trEMBL	tr\|B6VJV8\|B6VJV8_VITVI	5E-161	Ribosomal protein S3 {ECO:0000313\|EMBL:CAQ77614.1}
TAIR10	ATMG00090.1	8E-77	structural constituent of ribosome;protein binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123045113	123045847	+
GWHAAZE00000002	mRNA	123045113	123045847	+
GWHAAZE00000002	exon	123045113	123045847	+
GWHAAZE00000002	CDS	123045113	123045847	+

Transcript Sequence
>GWHTAAZE010091 ATGATCTTGCTTCATGAGAACAACAAAACCACCATCTCGCTCTTTCCTTTCTTCGGTGCTACCTTTTTCTTTCCACGGGATGGGGTTGGGGTGTATAATACCCTTTTTTTTGAGGATGCCCGGGAACAACTCCTAGGTAAATTAAGGAAAAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATGGAATTGATAGATAAATTAATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGTACGGGTACAACTCTTATTTGAACGAAGTTAAAAAAATGCGATCTTTGTTGTCTAATAGAACAAACACTAATACCTTAATTGAGTCGGTCAAGATCAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACCGAAGAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGTGAAGGATATTCCATTAGTAATGAAAAAGGGGGTGGGGGGGATCCGTATATGTTGTTCAGGTCGATCAGAAGGTGCAGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAACGTATTTAACCAGAAAATAGATTATGCTCCTGCGGAAGTCTCTACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATTTCATATAGTCAAAAAAAAAGGGGACGTGCTATATCCGAAACGTACGAAATATAG

Network for GWHGAAZE010079

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00189.21	Ribosomal_S3_C	151	227	3.90E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02982	RP-S3, rpsC	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.174
	SRR3591707	mature leaf	0.143
	SRR3591708	Shoot apex	0.906
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.086
	SRR3591711	White flower	0.250
	SRR3591712	Green floral bud	0.113
	SRR3591713	Yellow flower	0.371
SRP173429	SRR8316895	Juvenile bud stage	3.728
	SRR8316896	Juvenile bud stage	2.616
	SRR8316897	Juvenile bud stage	5.764
	SRR8316894	Third green stage	8.506
	SRR8316900	Third green stage	1.055
	SRR8316901	Third green stage	0.708
	SRR8316898	Complete white stage	3.156
	SRR8316899	Complete white stage	0.269
	SRR8316903	Complete white stage	3.772
	SRR8316902	Silver flowering stage	6.287
	SRR8316904	Silver flowering stage	6.941
	SRR8316905	Silver flowering stage	6.418
	SRR8316906	Gold flowering stage	0.082
	SRR8316907	Gold flowering stage	0.290
	SRR8316908	Gold flowering stage	0.242
SRP132670	SRR6706286	Control	0.034
	SRR6706287	Light intensity 50%	0.070
	SRR6706288	Light intensity 20%	0.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.799
	CNS0095593	Slightly white alabastrum(diploid) 2	2.226
	CNS0095594	Slightly white alabastrum(diploid) 3	3.331
	CNS0095595	Whole white alabastrum(diploid) 2	6.870
	CNS0095596	Whole white alabastrum(diploid) 3	4.311
	CNS0095597	Whole white alabastrum(diploid) 4	6.139
	CNS0095598	Silvery flower (diploied) 1	3.393
	CNS0095599	Silvery flower (diploied) 2	3.038
	CNS0095600	Silvery flower (diploied) 3	2.875
	CNS0095601	Golden flower (diploid) 1	3.565
	CNS0095602	Golden flower (diploid) 2	2.118
	CNS0095603	Golden flower (diploid) 3	2.442
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.103
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.417
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.632
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.704
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.968
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.855
	CNS0095610	Silvery flower (tetraploid) 1	2.525
	CNS0095611	Silvery flower (tetraploid) 2	2.649
	CNS0095612	Silvery flower (tetraploid) 3	1.637
	CNS0095613	Golden flower (tetraploid) 1	6.343
	CNS0095614	Golden flower (tetraploid) 2	2.850
	CNS0095615	Golden flower (tetraploid) 3	1.899
CRA001975	CRR073297	Stem 1	0.331
	CRR073298	Stem 2	0.735
	CRR073299	Stem 3	0.125
	CRR073300	Leaf 1	0.184
	CRR073301	Leaf 2	0.426
	CRR073302	Leaf 3	0.254
	CRR073303	Juvenile bud 1	0.491
	CRR073304	Juvenile bud 2	0.172
	CRR073305	Juvenile bud 3	1.346
	CRR073306	Third green 1	0.254
	CRR073307	Third green 2	0.314
	CRR073308	Third green 3	0.465
	CRR073309	Second white 1	0.827
	CRR073310	Second white 2	1.043
	CRR073311	Second white 3	7.027
	CRR073312	Silver flowering 1	5.772
	CRR073313	Silver flowering 2	1.643
	CRR073314	Silver flowering 3	1.816
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.250
	CRR073317	Gold flowering 3	0.798
	CRR073318	Tawny withering 1	1.385
	CRR073319	Tawny withering 2	0.701
	CRR073320	Tawny withering 3	0.198