Gene detail

Detail information of GWHGAAZE010052

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD31166.1	3.9468E-110	RNA polymerase beta' subunit protein (chloroplast) [Lonicera japonica]
Swissprot	tr\|A0ZZ26\|RPOC1_GOSBA	2E-97	DNA-directed RNA polymerase subunit beta' {ECO:0000255\|HAMAP-Rule:MF_01323}
trEMBL	tr\|D3WBT6\|D3WBT6_LONJA	1E-110	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}
TAIR10	ATCG00180.1	2E-68	DNA-directed RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	122731205	122732949	+
GWHAAZE00000002	mRNA	122731205	122732949	+
GWHAAZE00000002	exon	122731205	122731305	+
GWHAAZE00000002	exon	122731433	122731530	+
GWHAAZE00000002	exon	122732336	122732949	+
GWHAAZE00000002	CDS	122731205	122731305	+
GWHAAZE00000002	CDS	122731433	122731530	+
GWHAAZE00000002	CDS	122732336	122732949	+

Transcript Sequence
>GWHTAAZE010064 ATGCAAAAGACGACCCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGCTACATCAAACTCGCATGCCCAATTCGGAATGAGAAACTGTCATCCCATTCAATCCAACTGGGGATGCCCTGGACCTGACATGTCGCTTGGGAGGAGTAACATGAAGCTCAGAATTAGTGGTGCTATCCGAGAACAATTAGCCGATCTAGATTTACGAATTCTTGTAGATTATTCGTTGGTAGAATGGAAAGAGTTGGGGGAAGAAGGGCTTACAGGGAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGAATTTTTTGGCTAGACGCATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTGTGTCTATTACCAGTTCTTCCTCCTGAGTTGAGACCGCTTTTTCGGACAGATAGTAGTAGGCTAGTGAGGTCGGATATTAATGAACTCTATAGACGAGTTATCTATCGGAACAATACTCTTACTGATCTATTAACAACAAGTCGATTTGCGCCGGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATTCACTTCTTGATAATGGAATAGGCGGGCAACCAACGAAGGACGGTTCTAATCAAGTTTACAAGTCGTTTTCAGATAGAATTGCAGGTAAAGAGGAAGATTTCGTGAGACTCTGCTTGGCAAACGAGTCGATTATTCAGGGCGTTCCGTTATTGTCGTGGGCCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATAG

Network for GWHGAAZE010052

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04997.13	RNA_pol_Rpb1_1	121	234	2.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03046	rpoC	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.078
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.039
	SRR3591713	Yellow flower	0.042
SRP173429	SRR8316895	Juvenile bud stage	0.580
	SRR8316896	Juvenile bud stage	0.243
	SRR8316897	Juvenile bud stage	0.451
	SRR8316894	Third green stage	0.442
	SRR8316900	Third green stage	0.073
	SRR8316901	Third green stage	0.087
	SRR8316898	Complete white stage	0.200
	SRR8316899	Complete white stage	0.077
	SRR8316903	Complete white stage	0.383
	SRR8316902	Silver flowering stage	0.498
	SRR8316904	Silver flowering stage	0.562
	SRR8316905	Silver flowering stage	0.414
	SRR8316906	Gold flowering stage	0.004
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.010
	SRR6706287	Light intensity 50%	0.016
	SRR6706288	Light intensity 20%	0.027
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.269
	CNS0095593	Slightly white alabastrum(diploid) 2	0.180
	CNS0095594	Slightly white alabastrum(diploid) 3	0.295
	CNS0095595	Whole white alabastrum(diploid) 2	0.725
	CNS0095596	Whole white alabastrum(diploid) 3	0.496
	CNS0095597	Whole white alabastrum(diploid) 4	0.213
	CNS0095598	Silvery flower (diploied) 1	0.131
	CNS0095599	Silvery flower (diploied) 2	0.095
	CNS0095600	Silvery flower (diploied) 3	0.331
	CNS0095601	Golden flower (diploid) 1	0.183
	CNS0095602	Golden flower (diploid) 2	0.101
	CNS0095603	Golden flower (diploid) 3	0.175
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.131
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.164
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.086
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.327
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.112
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.106
	CNS0095610	Silvery flower (tetraploid) 1	0.045
	CNS0095611	Silvery flower (tetraploid) 2	0.226
	CNS0095612	Silvery flower (tetraploid) 3	0.052
	CNS0095613	Golden flower (tetraploid) 1	0.038
	CNS0095614	Golden flower (tetraploid) 2	0.114
	CNS0095615	Golden flower (tetraploid) 3	0.021
CRA001975	CRR073297	Stem 1	0.158
	CRR073298	Stem 2	0.080
	CRR073299	Stem 3	0.021
	CRR073300	Leaf 1	0.056
	CRR073301	Leaf 2	0.142
	CRR073302	Leaf 3	0.044
	CRR073303	Juvenile bud 1	0.148
	CRR073304	Juvenile bud 2	0.037
	CRR073305	Juvenile bud 3	0.132
	CRR073306	Third green 1	0.123
	CRR073307	Third green 2	0.001
	CRR073308	Third green 3	0.314
	CRR073309	Second white 1	0.055
	CRR073310	Second white 2	0.374
	CRR073311	Second white 3	0.561
	CRR073312	Silver flowering 1	1.196
	CRR073313	Silver flowering 2	0.060
	CRR073314	Silver flowering 3	0.236
	CRR073315	Gold flowering 1	0.205
	CRR073316	Gold flowering 2	0.155
	CRR073317	Gold flowering 3	0.136
	CRR073318	Tawny withering 1	0.080
	CRR073319	Tawny withering 2	0.057
	CRR073320	Tawny withering 3	0.041