Detail information of GWHGAAZE010051


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31191.10RNA polymerase beta subunit protein (chloroplast) [Lonicera japonica]
Swissprottr|Q49L06|RPOB_EUCGG0DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}
trEMBLtr|D3WBT5|D3WBT5_LONJA0DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}
TAIR10ATCG00190.13E-149RNA polymerase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene122729056122730937+
GWHAAZE00000002mRNA122729056122730937+
GWHAAZE00000002exon122729056122729557+
GWHAAZE00000002exon122729643122729758+
GWHAAZE00000002exon122730023122730937+
GWHAAZE00000002CDS122729056122729557+
GWHAAZE00000002CDS122729643122729758+
GWHAAZE00000002CDS122730023122730937+
Transcript Sequence

Network for GWHGAAZE010051

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00562.29RNA_pol_Rpb2_6882071.60E-15
PF00562.29RNA_pol_Rpb2_62104192.20E-66
PF04560.21RNA_pol_Rpb2_74214963.40E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03043rpoB RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
GO:0032549molecular_functionribonucleoside binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.020
SRR3591706second leaf0.041
SRR3591707mature leaf0.085
SRR3591708Shoot apex0.234
SRR3591709Stem0.000
SRR3591710White floral bud0.026
SRR3591711White flower0.000
SRR3591712Green floral bud0.116
SRR3591713Yellow flower0.029
SRP173429 SRR8316895Juvenile bud stage 0.579
SRR8316896Juvenile bud stage 0.270
SRR8316897Juvenile bud stage 0.796
SRR8316894Third green stage 1.182
SRR8316900Third green stage 0.112
SRR8316901Third green stage 0.157
SRR8316898Complete white stage 0.244
SRR8316899Complete white stage 0.119
SRR8316903Complete white stage 0.270
SRR8316902Silver flowering stage0.494
SRR8316904Silver flowering stage0.378
SRR8316905Silver flowering stage0.371
SRR8316906Gold flowering stage 0.055
SRR8316907Gold flowering stage 0.229
SRR8316908Gold flowering stage 0.147
SRP132670SRR6706286Control0.037
SRR6706287Light intensity 50%0.081
SRR6706288Light intensity 20%0.059
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.418
CNS0095593Slightly white alabastrum(diploid) 20.113
CNS0095594Slightly white alabastrum(diploid) 30.320
CNS0095595Whole white alabastrum(diploid) 20.560
CNS0095596Whole white alabastrum(diploid) 30.374
CNS0095597Whole white alabastrum(diploid) 40.718
CNS0095598Silvery flower (diploied) 10.297
CNS0095599Silvery flower (diploied) 20.357
CNS0095600Silvery flower (diploied) 30.166
CNS0095601Golden flower (diploid) 10.533
CNS0095602Golden flower (diploid) 20.253
CNS0095603Golden flower (diploid) 30.262
CNS0095604Slightly white alabastrum(tetraploid) 10.555
CNS0095605Slightly white alabastrum(tetraploid) 20.389
CNS0095606Slightly white alabastrum(tetraploid) 30.252
CNS0095607Whole white alabastrum(tetraploid) 10.137
CNS0095608Whole white alabastrum(tetraploid) 20.435
CNS0095609Whole white alabastrum(tetraploid) 30.314
CNS0095610Silvery flower (tetraploid) 10.276
CNS0095611Silvery flower (tetraploid) 20.253
CNS0095612Silvery flower (tetraploid) 30.251
CNS0095613Golden flower (tetraploid) 10.367
CNS0095614Golden flower (tetraploid) 20.347
CNS0095615Golden flower (tetraploid) 30.070
CRA001975CRR073297Stem 10.231
CRR073298Stem 20.244
CRR073299Stem 30.071
CRR073300Leaf 10.188
CRR073301Leaf 20.179
CRR073302Leaf 30.111
CRR073303Juvenile bud 10.126
CRR073304Juvenile bud 20.132
CRR073305Juvenile bud 30.765
CRR073306Third green 10.179
CRR073307Third green 20.015
CRR073308Third green 30.212
CRR073309Second white 10.039
CRR073310Second white 20.938
CRR073311Second white 31.109
CRR073312Silver flowering 10.992
CRR073313Silver flowering 20.246
CRR073314Silver flowering 30.614
CRR073315Gold flowering 10.347
CRR073316Gold flowering 20.561
CRR073317Gold flowering 30.157
CRR073318Tawny withering 10.209
CRR073319Tawny withering 20.516
CRR073320Tawny withering 30.083