Detail information of GWHGAAZE010045


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31191.10RNA polymerase beta subunit protein (chloroplast) [Lonicera japonica]
Swissprottr|Q68S14|RPOB_PANGI0DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}
trEMBLtr|D3WBT5|D3WBT5_LONJA0DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}
TAIR10ATCG00190.10RNA polymerase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene122471448122473612-
GWHAAZE00000002mRNA122471448122473612-
GWHAAZE00000002exon122473102122473612-
GWHAAZE00000002exon122471448122472994-
GWHAAZE00000002CDS122473102122473612-
GWHAAZE00000002CDS122471448122472994-
Transcript Sequence

Network for GWHGAAZE010045

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04565.17RNA_pol_Rpb2_338985.60E-19
PF00562.29RNA_pol_Rpb2_61995941.40E-115
PF04560.21RNA_pol_Rpb2_75966715.20E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03043rpoB RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
GO:0032549molecular_functionribonucleoside binding
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.032
SRR3591706second leaf0.054
SRR3591707mature leaf0.075
SRR3591708Shoot apex0.224
SRR3591709Stem0.000
SRR3591710White floral bud0.020
SRR3591711White flower0.027
SRR3591712Green floral bud0.071
SRR3591713Yellow flower0.065
SRP173429 SRR8316895Juvenile bud stage 0.502
SRR8316896Juvenile bud stage 0.169
SRR8316897Juvenile bud stage 1.345
SRR8316894Third green stage 1.273
SRR8316900Third green stage 0.168
SRR8316901Third green stage 0.247
SRR8316898Complete white stage 0.428
SRR8316899Complete white stage 0.092
SRR8316903Complete white stage 0.504
SRR8316902Silver flowering stage0.656
SRR8316904Silver flowering stage0.404
SRR8316905Silver flowering stage0.679
SRR8316906Gold flowering stage 0.020
SRR8316907Gold flowering stage 0.136
SRR8316908Gold flowering stage 0.085
SRP132670SRR6706286Control0.070
SRR6706287Light intensity 50%0.129
SRR6706288Light intensity 20%0.132
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.770
CNS0095593Slightly white alabastrum(diploid) 20.343
CNS0095594Slightly white alabastrum(diploid) 30.383
CNS0095595Whole white alabastrum(diploid) 20.852
CNS0095596Whole white alabastrum(diploid) 30.476
CNS0095597Whole white alabastrum(diploid) 40.874
CNS0095598Silvery flower (diploied) 10.227
CNS0095599Silvery flower (diploied) 20.456
CNS0095600Silvery flower (diploied) 30.325
CNS0095601Golden flower (diploid) 10.700
CNS0095602Golden flower (diploid) 20.313
CNS0095603Golden flower (diploid) 30.334
CNS0095604Slightly white alabastrum(tetraploid) 10.464
CNS0095605Slightly white alabastrum(tetraploid) 20.529
CNS0095606Slightly white alabastrum(tetraploid) 30.218
CNS0095607Whole white alabastrum(tetraploid) 10.467
CNS0095608Whole white alabastrum(tetraploid) 20.484
CNS0095609Whole white alabastrum(tetraploid) 30.314
CNS0095610Silvery flower (tetraploid) 10.355
CNS0095611Silvery flower (tetraploid) 20.403
CNS0095612Silvery flower (tetraploid) 30.357
CNS0095613Golden flower (tetraploid) 10.367
CNS0095614Golden flower (tetraploid) 20.494
CNS0095615Golden flower (tetraploid) 30.165
CRA001975CRR073297Stem 10.414
CRR073298Stem 20.262
CRR073299Stem 30.141
CRR073300Leaf 10.232
CRR073301Leaf 20.179
CRR073302Leaf 30.066
CRR073303Juvenile bud 10.331
CRR073304Juvenile bud 20.282
CRR073305Juvenile bud 30.312
CRR073306Third green 10.279
CRR073307Third green 20.083
CRR073308Third green 30.267
CRR073309Second white 10.048
CRR073310Second white 20.762
CRR073311Second white 31.029
CRR073312Silver flowering 11.077
CRR073313Silver flowering 20.290
CRR073314Silver flowering 30.272
CRR073315Gold flowering 10.346
CRR073316Gold flowering 20.461
CRR073317Gold flowering 30.224
CRR073318Tawny withering 10.209
CRR073319Tawny withering 20.239
CRR073320Tawny withering 30.149