Gene detail

Detail information of GWHGAAZE010034

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI28424.3	1.11765E-55	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9C5U2\|AHK2_ARATH	1E-41	Histidine kinase 2
trEMBL	tr\|F6HHM7\|F6HHM7_VITVI	5E-56	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51723.1}
TAIR10	AT5G35750.1	1E-38	histidine kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	122373579	122377928	-
GWHAAZE00000002	mRNA	122373579	122377928	-
GWHAAZE00000002	exon	122373579	122373866	-
GWHAAZE00000002	exon	122374483	122374670	-
GWHAAZE00000002	exon	122375584	122375701	-
GWHAAZE00000002	exon	122375784	122375841	-
GWHAAZE00000002	exon	122375918	122376154	-
GWHAAZE00000002	exon	122376266	122376302	-
GWHAAZE00000002	exon	122377056	122377199	-
GWHAAZE00000002	exon	122377790	122377928	-
GWHAAZE00000002	CDS	122377790	122377928	-
GWHAAZE00000002	CDS	122377056	122377199	-
GWHAAZE00000002	CDS	122376266	122376302	-
GWHAAZE00000002	CDS	122375918	122376154	-
GWHAAZE00000002	CDS	122375784	122375841	-
GWHAAZE00000002	CDS	122375584	122375701	-
GWHAAZE00000002	CDS	122374483	122374670	-
GWHAAZE00000002	CDS	122373579	122373866	-

Transcript Sequence
>GWHTAAZE010046 ATGGGTGGCAGTCGTCTTCTTACTCACGCCGTTGGTGGAATCGAAGCTATCGCCATTTCGATCGGGTACATACGTGTAGTTACGATATTCACGAGAATCCTATCGAGGAGAAAGAACCCACTTCCTTTCAAAGACAATGACTTCCTTTCCTATGAGGATTACCGGTGCCTGCGCATAGTCATTCTTATTACTCCAAGTGTGTCTGCTTCTTTTGTACATGTTTCGGTTGCGGTGGTGAGACCGGGAAGGAGCGGGGGAAGAAAAGTCGATCGAAGTGCCATATATGCTACACCTGAGCAACGTATTAAAGCAACTGTGGGGTATCTGGGTGCATCTTATGATGTCCCATCTTTAGTGGAGAAGCTTCTACACCAACTTGCCAGCAAACAGACGATTGTTGTGAATGTCTACGATACAACTAATATATCTGCACCCATCAACATGTACGGTCCTAATGCTACAGATATGGGTCTGTTGCACATCAGCAACCTTTATTTTGGGGATCCATTTCGGAAGCATGGGATGCACTGCAGGTTAGCTGTTCTGACTTATGAAGGATTTAAGCAGAAACCTCCCCCACCTTGGACAGCAATAACGGCATCAGTGGGAGTCCTAATGATGGAGCTCAAAGTTCGAGCTGAAGCTGCAGATGTGGCAAAGTCTCAGGTGTACAGTAATAGAGTGCTCAAGGGAGGGACATGCGGGAATTTCACTATTCTAAAAGAAAGAAATCTCCTACCGTCCGACTTCCCTTCCAGCTCTTCTTGTTCAATACCGCTTCTCCTCCTTGTAAATATCCTCTCTTACCGCTCTTATGGAGCAATCGGTCGAGCTGTATCGGTCAACTGTAGGAAACTGGCCAATTGCTGTCAACTGGTAGCAACCGCGAATCTTTTGTTTGCTTTGTTTCCAGCTGGCCTGGGAGGGGAAGACTCTTTTTGCCACTTTGGGTCTAGCTCAAAAGATAGGTGGTTCCTTGATCTCAATCAGGAGCCACAGGAACTTGCCGAAGTTCCCGCAGAGGAGGTCCCTGAACCCGATTTGGATCCGTATAATGAAAGAGATCCTGATCGAATTCAAGCCATTTTGCATTCCCGGAGAAAATCAATGTCAAAGAAAACGAAATCAGAGGGTTACTTGAAGGCATCGTCAGGAAAGAAATCGGGAAACAGCGAATCTCTTCCGACCATTTTGATTTCCGTCGACTAG

Network for GWHGAAZE010034

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03924.14	CHASE	95	149	0.00014

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14489	AHK2_3_4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.280
	SRR8316896	Juvenile bud stage	0.142
	SRR8316897	Juvenile bud stage	0.367
	SRR8316894	Third green stage	0.599
	SRR8316900	Third green stage	0.061
	SRR8316901	Third green stage	0.121
	SRR8316898	Complete white stage	0.101
	SRR8316899	Complete white stage	0.029
	SRR8316903	Complete white stage	0.297
	SRR8316902	Silver flowering stage	0.166
	SRR8316904	Silver flowering stage	0.254
	SRR8316905	Silver flowering stage	0.229
	SRR8316906	Gold flowering stage	0.015
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.036
SRP132670	SRR6706286	Control	0.044
	SRR6706287	Light intensity 50%	0.036
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.083
	CNS0095593	Slightly white alabastrum(diploid) 2	0.196
	CNS0095594	Slightly white alabastrum(diploid) 3	0.267
	CNS0095595	Whole white alabastrum(diploid) 2	0.344
	CNS0095596	Whole white alabastrum(diploid) 3	0.249
	CNS0095597	Whole white alabastrum(diploid) 4	0.498
	CNS0095598	Silvery flower (diploied) 1	0.011
	CNS0095599	Silvery flower (diploied) 2	0.042
	CNS0095600	Silvery flower (diploied) 3	0.051
	CNS0095601	Golden flower (diploid) 1	0.212
	CNS0095602	Golden flower (diploid) 2	0.074
	CNS0095603	Golden flower (diploid) 3	0.119
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.178
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.178
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.033
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.501
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.315
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.126
	CNS0095610	Silvery flower (tetraploid) 1	0.014
	CNS0095611	Silvery flower (tetraploid) 2	0.083
	CNS0095612	Silvery flower (tetraploid) 3	0.008
	CNS0095613	Golden flower (tetraploid) 1	0.152
	CNS0095614	Golden flower (tetraploid) 2	0.082
	CNS0095615	Golden flower (tetraploid) 3	0.005
CRA001975	CRR073297	Stem 1	0.085
	CRR073298	Stem 2	0.080
	CRR073299	Stem 3	0.043
	CRR073300	Leaf 1	0.030
	CRR073301	Leaf 2	0.079
	CRR073302	Leaf 3	0.118
	CRR073303	Juvenile bud 1	0.391
	CRR073304	Juvenile bud 2	0.107
	CRR073305	Juvenile bud 3	0.578
	CRR073306	Third green 1	0.265
	CRR073307	Third green 2	0.186
	CRR073308	Third green 3	0.175
	CRR073309	Second white 1	0.100
	CRR073310	Second white 2	0.247
	CRR073311	Second white 3	0.621
	CRR073312	Silver flowering 1	0.657
	CRR073313	Silver flowering 2	0.692
	CRR073314	Silver flowering 3	0.509
	CRR073315	Gold flowering 1	0.111
	CRR073316	Gold flowering 2	0.130
	CRR073317	Gold flowering 3	0.227
	CRR073318	Tawny withering 1	0.307
	CRR073319	Tawny withering 2	0.060
	CRR073320	Tawny withering 3	0.308