Gene detail

Detail information of GWHGAAZE010013

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03583.1	1.1009E-150	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8H1D6\|RBK1_ARATH	8E-82	Receptor-like cytosolic serine/threonine-protein kinase RBK1
trEMBL	tr\|A0A068U7J2\|A0A068U7J2_COFCA	4E-151	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03583.1}
TAIR10	AT5G35960.1	8E-82	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	122027737	122029889	+
GWHAAZE00000002	mRNA	122027737	122029889	+
GWHAAZE00000002	exon	122027737	122028076	+
GWHAAZE00000002	exon	122028162	122028413	+
GWHAAZE00000002	exon	122028989	122029049	+
GWHAAZE00000002	exon	122029144	122029279	+
GWHAAZE00000002	exon	122029353	122029517	+
GWHAAZE00000002	exon	122029770	122029889	+
GWHAAZE00000002	CDS	122027737	122028076	+
GWHAAZE00000002	CDS	122028162	122028413	+
GWHAAZE00000002	CDS	122028989	122029049	+
GWHAAZE00000002	CDS	122029144	122029279	+
GWHAAZE00000002	CDS	122029353	122029517	+
GWHAAZE00000002	CDS	122029770	122029889	+

Transcript Sequence
>GWHTAAZE010025 ATGGAGAGTGAGAAGGAAGATGTGTACTCTCCTACTGGAGTTCTTGAGGACTACTTAAGGACCTTAGAATCCGAAGAAACTGTTTCTTCAAAAGCCAGCACTTCTGAATTTGAGGACCGTAAACTCTCAAAACCCTCTTCTCGATGGGCCGGTTTCTTCAAATTACTCAAAAATAAATCAAAGAGGCATTTAGGCACTTTGCATCCTCTCAATGCCCTAAAACTATCTAAAAGATTTAGCTGTAGTCTAAGAGAAGAAATTACTCCCATTGCCGATACTGATTTGAAGAGGAACTTCACCCTTTCTGAATTACAAACAGCAACCCATAATTTCTCTCGAGAGAATCTTGTTGGAAAGGGTGGTTATGCTGAGGTATATAAGGGGTGTTTGAGAGATGGGCAACTTGTTGCAATTAAGCGACTCACACGGGGTTCGCCAGAAGAGAAAATTGGTGATTTTTTATCCGAGCTCGGGGTGATGGCCCATGTTAACCACCGCAATACTGCTAAATTGATTGGGTATGGGGTTGAAGGAGGAATGCACCTTGTTCTTGAGCTCTCTCCCCATGGTAGTTTAGCTTCTTTCCTTCATGCAAAATGGCTGCCAGAGAACTGGACTCACCACACTGTGACAAAATTTGAAGGCACATTTGGATATCTTGCTCCCGAGTACTTAATGCATGGCATAGTAGACCAAAAAACTGATGTTTTCTCATTTGGTGTACTGCTCTTGGAACTTATCAGTGGACGTCGAGCTCTAGATTACTCGCAGCAAAGCCTAGTCATGTGGGCAAAACCACTACTGAAGAAGAACAAGATTAGAGAGCTTGTTGATCCTTCACTTGCTAATGACTACAACTCATTACAGATGAATCTAATGGTGTTGGCTGCCCTTTTATGCGTCCATCATTCTTCAATACGGCGTCCTCAAATGAGCCAGGCATGTGATTATCTCGTTGTTCAACTTCTTAAAGGCAACCACGGTAGCTTGGAACTGGTGATCAAATGCAGAAAGACATCATTTTGGAAGAGGTACTATGAAGACCTTTTCAATGACCATAAAAGCGCGGCTTAA

Network for GWHGAAZE010013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	114	199	6.60E-13
PF00069.26	Pkinase	208	315	1.90E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.208
	SRR3591706	second leaf	4.279
	SRR3591707	mature leaf	0.624
	SRR3591708	Shoot apex	5.966
	SRR3591709	Stem	21.302
	SRR3591710	White floral bud	10.722
	SRR3591711	White flower	1.337
	SRR3591712	Green floral bud	0.072
	SRR3591713	Yellow flower	2.916
SRP173429	SRR8316895	Juvenile bud stage	2.271
	SRR8316896	Juvenile bud stage	2.074
	SRR8316897	Juvenile bud stage	1.138
	SRR8316894	Third green stage	1.997
	SRR8316900	Third green stage	6.547
	SRR8316901	Third green stage	6.435
	SRR8316898	Complete white stage	4.435
	SRR8316899	Complete white stage	4.337
	SRR8316903	Complete white stage	7.242
	SRR8316902	Silver flowering stage	1.082
	SRR8316904	Silver flowering stage	2.871
	SRR8316905	Silver flowering stage	0.907
	SRR8316906	Gold flowering stage	3.848
	SRR8316907	Gold flowering stage	2.322
	SRR8316908	Gold flowering stage	4.299
SRP132670	SRR6706286	Control	2.446
	SRR6706287	Light intensity 50%	2.769
	SRR6706288	Light intensity 20%	2.601
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.549
	CNS0095593	Slightly white alabastrum(diploid) 2	2.295
	CNS0095594	Slightly white alabastrum(diploid) 3	1.364
	CNS0095595	Whole white alabastrum(diploid) 2	2.487
	CNS0095596	Whole white alabastrum(diploid) 3	2.754
	CNS0095597	Whole white alabastrum(diploid) 4	2.019
	CNS0095598	Silvery flower (diploied) 1	1.408
	CNS0095599	Silvery flower (diploied) 2	0.727
	CNS0095600	Silvery flower (diploied) 3	0.445
	CNS0095601	Golden flower (diploid) 1	1.267
	CNS0095602	Golden flower (diploid) 2	0.310
	CNS0095603	Golden flower (diploid) 3	0.899
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.291
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.664
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.317
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.237
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.962
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.897
	CNS0095610	Silvery flower (tetraploid) 1	1.286
	CNS0095611	Silvery flower (tetraploid) 2	1.983
	CNS0095612	Silvery flower (tetraploid) 3	1.849
	CNS0095613	Golden flower (tetraploid) 1	0.665
	CNS0095614	Golden flower (tetraploid) 2	2.738
	CNS0095615	Golden flower (tetraploid) 3	4.384
CRA001975	CRR073297	Stem 1	3.868
	CRR073298	Stem 2	4.056
	CRR073299	Stem 3	2.196
	CRR073300	Leaf 1	4.358
	CRR073301	Leaf 2	4.269
	CRR073302	Leaf 3	3.458
	CRR073303	Juvenile bud 1	2.034
	CRR073304	Juvenile bud 2	1.768
	CRR073305	Juvenile bud 3	1.373
	CRR073306	Third green 1	2.404
	CRR073307	Third green 2	1.273
	CRR073308	Third green 3	0.463
	CRR073309	Second white 1	0.498
	CRR073310	Second white 2	0.637
	CRR073311	Second white 3	0.744
	CRR073312	Silver flowering 1	1.176
	CRR073313	Silver flowering 2	0.315
	CRR073314	Silver flowering 3	0.297
	CRR073315	Gold flowering 1	2.140
	CRR073316	Gold flowering 2	2.344
	CRR073317	Gold flowering 3	1.883
	CRR073318	Tawny withering 1	3.782
	CRR073319	Tawny withering 2	1.270
	CRR073320	Tawny withering 3	4.565