Gene detail

Detail information of GWHGAAZE009993

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002301547.1	6.7128E-149	multidrug resistant ABC transporter family protein [Populus trichocarpa]
Swissprot	tr\|O80725\|AB4B_ARATH	9E-141	ABC transporter B family member 4
trEMBL	tr\|B9GT94\|B9GT94_POPTR	3E-149	Multidrug resistant ABC transporter family protein {ECO:0000313\|EMBL:EEE80820.1}
TAIR10	AT2G47000.1	3E-121	ATP binding cassette subfamily B4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	121633324	121634430	+
GWHAAZE00000002	mRNA	121633324	121634430	+
GWHAAZE00000002	exon	121633324	121633430	+
GWHAAZE00000002	exon	121633509	121633658	+
GWHAAZE00000002	exon	121633736	121634033	+
GWHAAZE00000002	exon	121634152	121634430	+
GWHAAZE00000002	CDS	121633324	121633430	+
GWHAAZE00000002	CDS	121633509	121633658	+
GWHAAZE00000002	CDS	121633736	121634033	+
GWHAAZE00000002	CDS	121634152	121634430	+

Transcript Sequence
>GWHTAAZE010005 ATGGATATTGTGTTTCTCAGTTATGGTTTAGCTGTTTGGTTTGGTGGTAAGATGATACTGGAAAAAGGTTATACTGGGGTTCAAGTGATCAACGTAATTGTTGCCCTGTCCCTAGGGCAGGCCTCTCCCTGTATGAGTGCATTTGTAGCTGGTCAAGCTGCAGCGTACAAGATGTTTGAGACCATAAATTGGAAGCCTGAGATAGATGCATACGATACCAGAGGAAAGATATTAGATGACATCCGTGGAGATATCGATGGCACAACTGCCGCTTTGGTTGGACAGAGTGGACGCGGCAAGTCTACTGTGATCAGTCTGATAGAAAGATTTTACGATCCCCACGTTGGTCAAGTTCTTATCGATGGAACCAATCTTAAAGAATTCCAACTTAAATGGATTAGGGAGAAGATCGGTCTTGTTAGTCAAGAACCCGTCCTGTTTTCTTCCAGCATTAAGGATAACATTGCTTATGGGAAGGATGGTGCAATTGCCGAAGATATCAGAGCAGCCGCCGAGCTAGAAAATGCTGCTAAATTCATTGATAAACTGCCTCGGGGACTAGACACTATGGTTGGTGAGCACAAAACTCAGCTATCCGGTGGACAGAAGCAAAGAGTTGCCATAGCCAGAACAATTCTAAAAGACCCGCGGATTCTACTTCTGGATGAAGCAACAAGTGCACTGTATGCGGAATCCGAGAGAATTGTGCAAGAGGCATTGGACCGGATTATGGTTAATAGAACAACCGTCATTGTCGCACATCGTTTGAGCACAATCAGGAACGCAGACATTATTGCAGTTATTCATCGAGGAAAGATGGTTGAGAAAGGTTAA

Network for GWHGAAZE009993

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.28	ABC_tran	87	226	3.50E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.222
	SRR3591706	second leaf	0.167
	SRR3591707	mature leaf	0.197
	SRR3591708	Shoot apex	0.122
	SRR3591709	Stem	0.974
	SRR3591710	White floral bud	0.137
	SRR3591711	White flower	0.399
	SRR3591712	Green floral bud	0.247
	SRR3591713	Yellow flower	0.540
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.020
	SRR8316897	Juvenile bud stage	0.336
	SRR8316894	Third green stage	0.140
	SRR8316900	Third green stage	0.108
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.089
	SRR8316903	Complete white stage	0.093
	SRR8316902	Silver flowering stage	0.123
	SRR8316904	Silver flowering stage	0.206
	SRR8316905	Silver flowering stage	0.020
	SRR8316906	Gold flowering stage	0.177
	SRR8316907	Gold flowering stage	0.126
	SRR8316908	Gold flowering stage	0.015
SRP132670	SRR6706286	Control	0.015
	SRR6706287	Light intensity 50%	0.014
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.003
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.074
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.066
	CNS0095600	Silvery flower (diploied) 3	0.161
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.046
	CNS0095603	Golden flower (diploid) 3	0.044
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.008
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.008
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.283
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.012
	CNS0095613	Golden flower (tetraploid) 1	0.065
	CNS0095614	Golden flower (tetraploid) 2	0.023
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.124
	CRR073298	Stem 2	0.095
	CRR073299	Stem 3	0.031
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.063
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.008
	CRR073304	Juvenile bud 2	0.031
	CRR073305	Juvenile bud 3	0.027
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.011
	CRR073312	Silver flowering 1	0.186
	CRR073313	Silver flowering 2	0.130
	CRR073314	Silver flowering 3	0.260
	CRR073315	Gold flowering 1	0.019
	CRR073316	Gold flowering 2	0.078
	CRR073317	Gold flowering 3	0.066
	CRR073318	Tawny withering 1	0.073
	CRR073319	Tawny withering 2	0.065
	CRR073320	Tawny withering 3	0.014