Gene detail

Detail information of GWHGAAZE009992

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002273987.1	PREDICTED: ABC transporter B family member 11 [Vitis vinifera]
Swissprot	tr\|Q9FWX7\|AB11B_ARATH	ABC transporter B family member 11
trEMBL	tr\|F6HZG2\|F6HZG2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60077.1}
TAIR10	AT3G62150.1	P-glycoprotein 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	121626545	121632055	+
GWHAAZE00000002	mRNA	121626545	121632055	+
GWHAAZE00000002	exon	121626545	121626865	+
GWHAAZE00000002	exon	121627229	121627283	+
GWHAAZE00000002	exon	121627437	121627612	+
GWHAAZE00000002	exon	121627721	121627942	+
GWHAAZE00000002	exon	121628080	121628318	+
GWHAAZE00000002	exon	121628439	121628964	+
GWHAAZE00000002	exon	121629083	121629356	+
GWHAAZE00000002	exon	121629488	121630377	+
GWHAAZE00000002	exon	121630509	121630775	+
GWHAAZE00000002	exon	121630885	121631148	+
GWHAAZE00000002	exon	121631267	121631563	+
GWHAAZE00000002	exon	121631702	121632055	+
GWHAAZE00000002	CDS	121626545	121626865	+
GWHAAZE00000002	CDS	121627229	121627283	+
GWHAAZE00000002	CDS	121627437	121627612	+
GWHAAZE00000002	CDS	121627721	121627942	+
GWHAAZE00000002	CDS	121628080	121628318	+
GWHAAZE00000002	CDS	121628439	121628964	+
GWHAAZE00000002	CDS	121629083	121629356	+
GWHAAZE00000002	CDS	121629488	121630377	+
GWHAAZE00000002	CDS	121630509	121630775	+
GWHAAZE00000002	CDS	121630885	121631148	+
GWHAAZE00000002	CDS	121631267	121631563	+
GWHAAZE00000002	CDS	121631702	121632055	+

Transcript Sequence
>GWHTAAZE010004 ATGACGAGGGAGAATGGGTTGGAAGGTGGGGGATCAATCGCATCAACAAGAGATGGCCCTGCCCTTGAAACAGAGGCCAACCACACAAGTAACGGGGCCTCCCCCGGCACAAAGGAAAAGGGGATCACCAATACAGTCCCGTTTTACAAGCTCTTTCACTTTGCTGATTCATTAGATTCCATATTGATGATCGCTGGTAGCATTGGCGCCATTGGTAATGGGCTGTGCATGCCCCTTATGACCATACTTATGGGGGAACTGATTGATTCTTTCGGACAAAACCAAAACAACAACGACCACGTCGTCCGTGTAGTTTCCAAGGTATCACTGAAATTCGTGTATCTGGCTATAGGGGCTGGTGCGGCAGCATTCCTCCAGGTATCATGCTGGATGGTGACAGGAGAGAGGCAAGCTGCAAGAATAAGGAGTCTATATTTGAGAACTATATTAAGACAAGATGTGGCTTTCTTTGACATGGAAACAAACACGGGAGAGGTTGTTGGGAGGATGTCTGGTGATACAGTTCTCATCCAAGATGCTATGGGGGAGAAGGTTGGGAAATTTTTGCAACTGGTATCTACATTTTTGGGAGGATTTGTAATAGCTTTCACCGAAGGATGGCTTCTTTCTTTGGTCATGTTATCCTCTATACCTCCCCTTGTCATAGCCGGTGGAATCATGTCCCTCGTGATATCCAGGATGGCCTCCATTGGCCAGCAGGCTTACGCTAAGGCATCTGTTGTTGTTGAACAGACAATTGGCTCCATCAGAACAGTTGCATCATTTACTGGGGAGAAACAAGCTGTCGTGAATTACAATAAATCTCTCATAAATGCTTACAAATCAGGTGTTCACGAAGGCTTGGTTTCTGGATTAGGTTTTGGAACCCTTATGGGTATTGTGTTCCTCAGTTATGGTTTAGCTGTTTGGTTTGGTGGTAAGATGATACTGGAAAAAGGTTATACTGGGGGTCAAGTGATCAACGTAATTGTTGCCCTGTTGACTGGTTCTATGTCCCTAGGGCAGGCCTCTCCCTGTATGAGTGCATTTGCAGCTGGTCAAGCTGCAGCGTACAAGATGTTTGAGACCATAAATAGGAAGCCTGAGATAGATGCATACGATACCAGAGGAAAGATATTAGATGACATCCGTGGAGATATCGAGTTAAGGGATATTCATTTCAGTTATCCAGCAAGACCAGACGAGCAAATCTTCAGTGGATTCTCTCTTTCCATTCGTAGTGGCACAACAGCCGCCTTGGTTGGACAGAGTGGAAGTGGCAAGTCTACTGTGATCAGTCTGATAGAAAGATTTTACGATCCCCACGCTGGTCAAGTTCTTATCGATGGAACCAATCTTAAAGAATTCCAACTTAAATGGATTAGGGAGAAGATCGGTCTTGTTAGTCAAGAACCCGTCCTGTTTTCTTCCAGCATTAAGGATAACATTGCTTATGGGAAGGATGGTGCAACTGCCGAAGAGATCAGAGCAGCCGCTGAGCTGGCAAATGCTGCTAAATTCATTGATAAACTGCCTCAGGGACTAGACACTATGGTTGGTGAGCACGGAACTCAGCTATCCGGTGGACAGAAGCAAAGAGTTGCCATAGCCAGAGCAATTCTAAAAGACCCGCGGATTCTACTTCTGGATGAAGCAACAAGTGCACTGGATGCGGAATCCGAGAGAATTGTGCAAGAGGCATTGGACCGGATTATGGTTAATAGAACAACCGTCATTGTCGCACATCGTTTGAGCACAATCAGGAACGCAGACATGATTGCAGTTATTCATCGAGGAAAGATGGTTGAAAAAGGCTCACATTCAGAACTACTCAAGGATCCTGAAGGAGCATACTCTCAGCTTATAAGATTGCAAGGGACAAGTAATAATGATTCGGAGCAGCAAGGTGGAGATGACCAAAAAAAAACAGAGATTAGCATGGAATCTGGAAGGCAGTTAAGTCAAAGAATGTCATACCTGCGTTCCTTAAGTCGGGGATCATCGGGAGGAGGAAATAGCAGTCGCCACTCAATCTCCTCTGTCTCCTTTGGTCTACCTACAGCACTAAGCATGCGAGAAAGAACAGATCCAGAAGGCCCTTCCCAGCAAACATCAGAAAAGCTTCCAAAAGTGCAGTTGCGTCGTCTCGCCTATCTCAACAAGCCCGAGATACCGGTGCTGGTAATAGGAACCATAGCTGCTATCGCCAATGGTACAATATTTCCAATCTTTGGCATACTCATTTCTAGTATGATCAAAACATTTTATGAGCCCCCATCAGAACTAAGGAAGGATTCGAGATTTTGGGCACTAATTTTTGTAGTCCTCGGGGTAGCTTCGTTTTTGGTGTATCCAGCCCGGACATACTTTTTTGCTGTGGCTGGATGTAAGTTAGTAACGCGGATCAGATCGATGTGCTTTGAGAAGGTGGTTCACATGGAAGTTGGTTGGTTTGATGAGCCTGAAAATTCAAGTGGAGCAATTGGTGCGAGGCTTTCTGGAGATGCGGCTTCCGTGCGTGCTCTAGTTGGGGATGCACTTGGTCAGATTGTTCAAGACGCTGCATCTGTTGCTGCCGGTTTGACCATTGCTTTTCTAGCGTCTTGGCAGTTGGCACTGATTATTATTGCTTTGATACCTCTGATAGGAGCTAACGGATATGTTCAGATTAAGTTCATGAAAGGGTTCAGTGCAGACGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGGAGTATAAGAACAGTGGCTTCATTTTGTGCAGAAGAGAAGGTGATGGAGCTATACAGAAAGAAGTGTGATGGTCCAATGAAGACAGGGATAAGGCAAGGGTTGATAAGTGGGATAGGTTTTGGGGTATCTTTTGCGTTGCTGTTTTTGGTCTATGCTACTAGCTTTTATGCGGGAGCCCGGCTTGTTGAGGATGGCAAAACAACATTTAGTGATGTTTTCCGTGTTTTCTTTGCTCTGACCATGGCAGCAGTAGCAGTCTCTCAGTCAAGCTCGATGGGCCCAGATACATCCAAAGCCAAAAGTGCTGCTGCTTCGATATTTGCCATTCTGGACCGCAAGTCTGAGATAGATGCAAGTGATGAGTCTGGGATGACGTTAGATAATGTCAAGGGAGAAATTGAGCTACGTCATTTAAGCTTCAAGTATCCGAGTAGGCCTGATATTCAGATTCTCAGAGACCTCAGCTTGACCATTCACAGCGGCAAGACAGTTGCTCTAGTTGGAGAAAGTGGAAGCGGGAAGTCAACAGTGATTGCGCTGTTGCAAAGATTCTATAATCCTGAGTCAGGTAGTATTACAATGGACGGAATAGAGCTACAGAAATTCCAATTGAAGTGGCTGAGGCAGCAGATGGGGCTTGTGAGCCAAGAACCGGTCTTGTTCAATGACACAATCCGAGCCAACATTGCTTACGGCAAGGAAAAGGGCCAAGCGACTGAGGCTGAAATTTTAGCTGCATCGGAGATGGCAAATGCACACCACTTCGTCAGTTCACTGCAACAGGGATATGATACGCAAGTAGGCGAGCGAGGAGTGCAATTGTCAGGTGGACAGAAGCAGAGAGTGGCTATAGCGCGTGCCATAGTGAAAAGTCCAAAGATACTACTACTAGACGAGGCAACAAGCGCACTAGATGCTGAATCAGAGAGAGTGGTTCAAGATGCACTGGACCGGGTGATGGTGAACCGGACTACGGTTGTGGTGGCCCACAGGTTGTCCACAATCAAGGGAGCCGACGTTATTGCAGTGGTAAAAAATGGAGTTATCGTCGAGAAAGGAAAGCATGAGAAGCTGATCAACATTACAGATGGTTTCTACGCCTCCTTGGTTGCACTTCACACGAGTGCATCATCCTAG

Network for GWHGAAZE009992

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	64	338	1.50E-57
PF00005.28	ABC_tran	407	554	8.10E-35
PF00664.24	ABC_membrane	727	999	1.30E-59
PF00005.28	ABC_tran	1067	1218	4.80E-36

Protein Sequence

>GWHPAAZE009998
MTRENGLEGGGSIASTRDGPALETEANHTSNGASPGTKEKGITNTVPFYKLFHFADSLDSILMIAGSIGAIGNGLCMPLMTILMGELIDSFGQNQNNNDHVVRVVSKVSLKFVYLAIGAGAAAFLQVSCWMVTGERQAARIRSLYLRTILRQDVAFFDMETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLVSTFLGGFVIAFTEGWLLSLVMLSSIPPLVIAGGIMSLVISRMASIGQQAYAKASVVVEQTIGSIRTVASFTGEKQAVVNYNKSLINAYKSGVHEGLVSGLGFGTLMGIVFLSYGLAVWFGGKMILEKGYTGGQVINVIVALLTGSMSLGQASPCMSAFAAGQAAAYKMFETINRKPEIDAYDTRGKILDDIRGDIELRDIHFSYPARPDEQIFSGFSLSIRSGTTAALVGQSGSGKSTVISLIERFYDPHAGQVLIDGTNLKEFQLKWIREKIGLVSQEPVLFSSSIKDNIAYGKDGATAEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTIRNADMIAVIHRGKMVEKGSHSELLKDPEGAYSQLIRLQGTSNNDSEQQGGDDQKKTEISMESGRQLSQRMSYLRSLSRGSSGGGNSSRHSISSVSFGLPTALSMRERTDPEGPSQQTSEKLPKVQLRRLAYLNKPEIPVLVIGTIAAIANGTIFPIFGILISSMIKTFYEPPSELRKDSRFWALIFVVLGVASFLVYPARTYFFAVAGCKLVTRIRSMCFEKVVHMEVGWFDEPENSSGAIGARLSGDAASVRALVGDALGQIVQDAASVAAGLTIAFLASWQLALIIIALIPLIGANGYVQIKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCDGPMKTGIRQGLISGIGFGVSFALLFLVYATSFYAGARLVEDGKTTFSDVFRVFFALTMAAVAVSQSSSMGPDTSKAKSAAASIFAILDRKSEIDASDESGMTLDNVKGEIELRHLSFKYPSRPDIQILRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYNPESGSITMDGIELQKFQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEKGQATEAEILAASEMANAHHFVSSLQQGYDTQVGERGVQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKGADVIAVVKNGVIVEKGKHEKLINITDGFYASLVALHTSASS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.758
	SRR3591706	second leaf	6.292
	SRR3591707	mature leaf	18.044
	SRR3591708	Shoot apex	5.281
	SRR3591709	Stem	45.862
	SRR3591710	White floral bud	11.189
	SRR3591711	White flower	22.524
	SRR3591712	Green floral bud	12.959
	SRR3591713	Yellow flower	28.824
SRP173429	SRR8316895	Juvenile bud stage	6.934
	SRR8316896	Juvenile bud stage	14.497
	SRR8316897	Juvenile bud stage	3.871
	SRR8316894	Third green stage	5.457
	SRR8316900	Third green stage	13.345
	SRR8316901	Third green stage	12.815
	SRR8316898	Complete white stage	2.249
	SRR8316899	Complete white stage	11.352
	SRR8316903	Complete white stage	5.307
	SRR8316902	Silver flowering stage	6.337
	SRR8316904	Silver flowering stage	10.463
	SRR8316905	Silver flowering stage	4.094
	SRR8316906	Gold flowering stage	51.536
	SRR8316907	Gold flowering stage	28.546
	SRR8316908	Gold flowering stage	56.754
SRP132670	SRR6706286	Control	17.577
	SRR6706287	Light intensity 50%	14.743
	SRR6706288	Light intensity 20%	13.744
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.473
	CNS0095593	Slightly white alabastrum(diploid) 2	11.332
	CNS0095594	Slightly white alabastrum(diploid) 3	10.565
	CNS0095595	Whole white alabastrum(diploid) 2	10.662
	CNS0095596	Whole white alabastrum(diploid) 3	9.352
	CNS0095597	Whole white alabastrum(diploid) 4	8.904
	CNS0095598	Silvery flower (diploied) 1	8.694
	CNS0095599	Silvery flower (diploied) 2	7.822
	CNS0095600	Silvery flower (diploied) 3	18.591
	CNS0095601	Golden flower (diploid) 1	9.393
	CNS0095602	Golden flower (diploid) 2	34.426
	CNS0095603	Golden flower (diploid) 3	32.504
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.988
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.026
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.336
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.891
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.816
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.833
	CNS0095610	Silvery flower (tetraploid) 1	20.442
	CNS0095611	Silvery flower (tetraploid) 2	10.886
	CNS0095612	Silvery flower (tetraploid) 3	8.696
	CNS0095613	Golden flower (tetraploid) 1	16.122
	CNS0095614	Golden flower (tetraploid) 2	31.101
	CNS0095615	Golden flower (tetraploid) 3	22.568
CRA001975	CRR073297	Stem 1	14.155
	CRR073298	Stem 2	14.704
	CRR073299	Stem 3	12.978
	CRR073300	Leaf 1	13.999
	CRR073301	Leaf 2	14.401
	CRR073302	Leaf 3	10.750
	CRR073303	Juvenile bud 1	10.005
	CRR073304	Juvenile bud 2	6.866
	CRR073305	Juvenile bud 3	15.547
	CRR073306	Third green 1	4.180
	CRR073307	Third green 2	3.997
	CRR073308	Third green 3	4.717
	CRR073309	Second white 1	8.727
	CRR073310	Second white 2	13.237
	CRR073311	Second white 3	18.472
	CRR073312	Silver flowering 1	42.529
	CRR073313	Silver flowering 2	40.439
	CRR073314	Silver flowering 3	35.033
	CRR073315	Gold flowering 1	16.512
	CRR073316	Gold flowering 2	20.111
	CRR073317	Gold flowering 3	14.694
	CRR073318	Tawny withering 1	22.731
	CRR073319	Tawny withering 2	26.354
	CRR073320	Tawny withering 3	16.648