Gene detail

Detail information of GWHGAAZE009990

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002273987.1	PREDICTED: ABC transporter B family member 11 [Vitis vinifera]
Swissprot	tr\|Q9FWX7\|AB11B_ARATH	ABC transporter B family member 11
trEMBL	tr\|F6HZG2\|F6HZG2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60077.1}
TAIR10	AT3G62150.1	P-glycoprotein 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	121541384	121547087	+
GWHAAZE00000002	mRNA	121541384	121547087	+
GWHAAZE00000002	exon	121541384	121541701	+
GWHAAZE00000002	exon	121541814	121541868	+
GWHAAZE00000002	exon	121541991	121542136	+
GWHAAZE00000002	exon	121542278	121542499	+
GWHAAZE00000002	exon	121542634	121542872	+
GWHAAZE00000002	exon	121542992	121543517	+
GWHAAZE00000002	exon	121543637	121543910	+
GWHAAZE00000002	exon	121544028	121544917	+
GWHAAZE00000002	exon	121545051	121545317	+
GWHAAZE00000002	exon	121545432	121545695	+
GWHAAZE00000002	exon	121546303	121546599	+
GWHAAZE00000002	exon	121546734	121547087	+
GWHAAZE00000002	CDS	121541384	121541701	+
GWHAAZE00000002	CDS	121541814	121541868	+
GWHAAZE00000002	CDS	121541991	121542136	+
GWHAAZE00000002	CDS	121542278	121542499	+
GWHAAZE00000002	CDS	121542634	121542872	+
GWHAAZE00000002	CDS	121542992	121543517	+
GWHAAZE00000002	CDS	121543637	121543910	+
GWHAAZE00000002	CDS	121544028	121544917	+
GWHAAZE00000002	CDS	121545051	121545317	+
GWHAAZE00000002	CDS	121545432	121545695	+
GWHAAZE00000002	CDS	121546303	121546599	+
GWHAAZE00000002	CDS	121546734	121547087	+

Transcript Sequence
>GWHTAAZE010002 ATGACTAGGGAGAATGGGTTGGAGAGTGGGGGATTAACCACATCGACAAGAGATGGCCCTGCCCTTGAAACAGAGGCCAACAACAGAAGTAACGGGGACTCTCCCGGGACAAAGGAAAAGAAGATCACCAATACAGTCCCATTTTACAAGCTCTTTCACTTTGCTGATTCGTTAGATTCTGTATTGATGATCGTCGGTAGCATTGGCGCTGTTGGTAATGGGCTGTGCATACCCCTTATGACCATAATTATGGGGGAACTGGTTGATTCTTTCGGACAAACCCAAAACAACAACGACGTTGTCCGTGTAGTTTCCAAGGTATCACTGAAATTTGTGTATCTGGCTATAGGGGCTGGTGCGGCAGCATTCCTCCAGGTATCATGCTGGATGGTGACAGGAGAGAGGCAAGCTGCAAGAATAAGGAGTCTATATTTGAGAACTATATTAAGACAAGATGTGGCTTTCTTTGACAAGGAAACAAATACCGGAGAAGTTGTTGGGAGGATGTCTGGTGATACAGTTGGGAAATTTTTGCAACTGGTATCTACATTTTTGGGAGGATTTGTAATAGCTTTCACCAAAGGATGGCTTCTTTCTCTGGTCATGTTATCCTCTATACCTCCCCTCGTCATAGCCGGTGGAATCATGTCCCTCATGATATCCAGGATGGCCTCCATTGGCCAACAGGCTTACGCTAAGGCATCTGTTGTTGTTGAACAGACTATTGGCTCCATCAGAACGGTTGCATCATTTACTGGGGAGAAACAAGCTGTCATGAATTACAATAAATCTCTCGTAAATGCTTACAAATCAGGAGTTCACGAAGGCTTGGTTTCTGGATTAGGTTTTGGAAACCTTATGGGTATCGTGTTCCTCAGTTATGGTTTGGCTGTTTGGTTTGGTGGTAAGATGATACTGGAAAAAGGTTATAGTGGCGGTCAAGTGATCAACGTAATTGTTGCCCTGTTGACTGGTTCTATGTCCCTAGGGCAGGCCTCTCCCTGTATGAGTGCATTTGCAGCTGGTCAAGCATCAGCGTACAAGATGTTTGAGACCATAAATAGGAAGCCTGAGATAGATGCATACGATACACGAGGAAAGATATTAGATGACATTCGTGGAGATATCGAGTTAAGGGATGTCCATTTCAGTTATCCAGCCAGACCAGATGAGCAAATCTTTAATGGATTCTCTCTTTCCATTTGTAGTGGCACTACTGCCGCCTTGGTTGGACAGAGTGGAAGCGGCAAGTCTACCGTGATCAGTCTGATAGAGAGATTTTATGATCCCAAAGCTGGTCAAGTTCTTATCGATGGAACCAATCTTAAAGATTTCCAACTTAAATGGATTAGGGGGAAGATTGGTCTTGTTAGTCAAGAACCTGTCCTGTTTTCTTCCAGCATTAAGGATAATATTGCTTATGGGAAGGATGGCGCAACTGCCGAAGAGATCAGAGCAGCCGCTGAGCTAGCAAATGCTGCTAAATTCATCGATAAACTGCCTCAGGGACTCGACACTATGGTTGGTGAGCATGGAACTCAGCTATCCGGTGGACAGAAGCAAAGAGTTGCCATAGCCAGAGCAATTCTAAAAGACCCGCGAATTCTACTTTTGGATGAAGCAACAAGTGCACTTGATGCGGAATCCGAGAGAATTGTGCAAGAGGCACTGGACCGGATTATGGTTAATAGAACGACTGTCATTGTTGCACATCGTTTGAGCACAGTCAGGAATGCCGACATGATTGCGGTTATTCATCGAGGAAAGATGGTTGAAAAAGGCTCCCATTTAGAACTACTCAAGGATCCTGAAGGAGCATACTCTCAGCTTGTAAGATTGCAAGACATGAATAATAATGATTCGGAGCAGCAAGGTGGAGATGACCAAAACAAAGCAGAGATTAGCATGGAATCTGGTAGGCAGTTAAGTCAAAGAATGTCTTACCTGCGTTCCTTAAGTCGGGGATCATCGGGAGAAGGAAATAGCAGTCGCCACTCGATCTCCTCTGTCTCCTTTGGTCTACCTACAGCACTAAGTGTGGGGGAAAGAATAGATCCAGAAGCCCATCCCCAGCAAACATCAGAAAAGCTTCCAAAAGTGCAGCTGCGTCGTCTCGCCTATCTCAACAAGCCCGAGATACCTGTGCTGATAATAGGAGCCATAGCTGCTATAGCTAATGGTACAATATTTCCAATCTTTGCCATACTCATTTCTGGTATGATCAAAACATTTTATGAGCCCCCATCAGAACTAAGGAAGGATTCAAGATTTTGGGCACTAATTTTTGTAGTCCTAGGGGTAGCAACGTTATTGGTGTATCCAGTGCAAACATACTTTTTTGCTGTGGCTGGATGTAAGTTAGTAAGACGGATCAGGTCGATGTGCTTTGAGAAGGTGATTCACATGGAGGTTAGTTGGTTTGATTTGCCTGAAAATTCAAGTGGAGCAATTGGTGCGAGGCTCTCTGCAGATGCGGCTTCCGTGCGTGCCCTAGTTGGAGATGCACTTGGTCAGATTGTTCAAGATGCATCATCCGTTACTGCCGGTTTGATCATTGCTTTTTTAGCATCTTGGCAGTTGGCACTGATTATTCTTGCTTTGATACCTCTGATAGGAGTTAATGGATATGTTCAGATTAAGTTCATGAAAGGGTTCAGTGCAGACGCAAAGATGATGTATGAGGAAGCAAGCCAAGTTGCTAATGACGCAGTTGGGAGTATAAGAACAGTGGCTTCATTTTGTGCTGAAGAGAAGATGATGGAGCTGTACAGAAAGAAGTGTGATGGTCCGATGAAGACAGGGATAAAGCAAGGGTTGATAAGTGGGATAGGCTTTGGGGTATCTTTTGCCTTGCTGTTTTTGGTATATGCTACCAGCTTTTATGCGGGAGCCCGGCTTGTTGAGGATGGCAAAACAACATTTAGTGCTGTTTTCCGTGTTTTCTTTGCTCTGACCATGGCAGCCACAGCAGTCTCTCAGTCGAGTTCGATGGGCCCAGATTCGTCCAAAGCCAAAAGCGCTGCTGCTTCGATATTTGCTATTCTAGACCGCAAGTCTGAGATAGACGCAAGTGATGAGTCTGGGATGACGTTAGAAAATGTCAACGGAGAAATTGAGCTACGTCATTTAAGCTTCAATTATCCGAGTAGGCCTGATATTCAGATTCTCAGAGACCTCAGCTTGACCATTCACAGCGGGAAGACAGTTGCTCTAGTTGGTGAAAGTGGAAGCGGGAAGTCAACAGTGATTGCGCTGTTGCAAAGATTCTATAATCCTGACTCAGGTAGTATTACATTGGATGGAATAGAGCTACAAAAATTCCAATTGAAGTGGCTGAGGCAGCAGATGGGGCTTGTGAGCCAAGAACCGGTCTTGTTTAGTGACACAATCCGAGCCAACATTGCTTTCGGCAAGGAAAAGGGCCAAGCGACCGAGGCTGAAATTTTAGCTGCATCAGAGATGGCAAATGCTCACCACTTCATCAGTTCACTGCAACAGGGTTATGATACGCAAGTAGGTGAGCGAGGAGTGCAACTGTCAGGTGGACAGAAGCAGAGAGTGGCTATAGCGCGTGCCATAGTGAAAAGTCCAAAGATACTACTTCTAGACGAGGCAACAAGCGCACTAGATGCTGAATCAGAGAGAGTGGTTCAAGATGCACTGGACCGGGTGATGGTGAACCGGACTACGGTTGTGGTGGCCCACAGGTTGTCCACAATCAAGGGTGCCGACGTTATCGCAGTGGTAAAAAATGGAGTTATTGTCGAGAAAGGAAAGCATGAGAAACTGATCAACATTACAAATGGTTTCTACGCCTCCTTGGTTGCACTTCATACGAGTGCATCATCATAG

Network for GWHGAAZE009990

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	64	327	6.60E-48
PF00005.28	ABC_tran	395	543	1.70E-34
PF00664.24	ABC_membrane	716	987	5.20E-59
PF00005.28	ABC_tran	1056	1207	4.50E-36

Protein Sequence

>GWHPAAZE009996
MTRENGLESGGLTTSTRDGPALETEANNRSNGDSPGTKEKKITNTVPFYKLFHFADSLDSVLMIVGSIGAVGNGLCIPLMTIIMGELVDSFGQTQNNNDVVRVVSKVSLKFVYLAIGAGAAAFLQVSCWMVTGERQAARIRSLYLRTILRQDVAFFDKETNTGEVVGRMSGDTVGKFLQLVSTFLGGFVIAFTKGWLLSLVMLSSIPPLVIAGGIMSLMISRMASIGQQAYAKASVVVEQTIGSIRTVASFTGEKQAVMNYNKSLVNAYKSGVHEGLVSGLGFGNLMGIVFLSYGLAVWFGGKMILEKGYSGGQVINVIVALLTGSMSLGQASPCMSAFAAGQASAYKMFETINRKPEIDAYDTRGKILDDIRGDIELRDVHFSYPARPDEQIFNGFSLSICSGTTAALVGQSGSGKSTVISLIERFYDPKAGQVLIDGTNLKDFQLKWIRGKIGLVSQEPVLFSSSIKDNIAYGKDGATAEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHLELLKDPEGAYSQLVRLQDMNNNDSEQQGGDDQNKAEISMESGRQLSQRMSYLRSLSRGSSGEGNSSRHSISSVSFGLPTALSVGERIDPEAHPQQTSEKLPKVQLRRLAYLNKPEIPVLIIGAIAAIANGTIFPIFAILISGMIKTFYEPPSELRKDSRFWALIFVVLGVATLLVYPVQTYFFAVAGCKLVRRIRSMCFEKVIHMEVSWFDLPENSSGAIGARLSADAASVRALVGDALGQIVQDASSVTAGLIIAFLASWQLALIILALIPLIGVNGYVQIKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKMMELYRKKCDGPMKTGIKQGLISGIGFGVSFALLFLVYATSFYAGARLVEDGKTTFSAVFRVFFALTMAATAVSQSSSMGPDSSKAKSAAASIFAILDRKSEIDASDESGMTLENVNGEIELRHLSFNYPSRPDIQILRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYNPDSGSITLDGIELQKFQLKWLRQQMGLVSQEPVLFSDTIRANIAFGKEKGQATEAEILAASEMANAHHFISSLQQGYDTQVGERGVQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKGADVIAVVKNGVIVEKGKHEKLINITNGFYASLVALHTSASS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.506
	SRR3591706	second leaf	0.083
	SRR3591707	mature leaf	0.137
	SRR3591708	Shoot apex	0.152
	SRR3591709	Stem	1.175
	SRR3591710	White floral bud	0.470
	SRR3591711	White flower	0.425
	SRR3591712	Green floral bud	0.364
	SRR3591713	Yellow flower	1.768
SRP173429	SRR8316895	Juvenile bud stage	0.185
	SRR8316896	Juvenile bud stage	0.334
	SRR8316897	Juvenile bud stage	0.300
	SRR8316894	Third green stage	0.164
	SRR8316900	Third green stage	0.204
	SRR8316901	Third green stage	0.306
	SRR8316898	Complete white stage	0.046
	SRR8316899	Complete white stage	0.480
	SRR8316903	Complete white stage	0.230
	SRR8316902	Silver flowering stage	0.173
	SRR8316904	Silver flowering stage	0.372
	SRR8316905	Silver flowering stage	0.142
	SRR8316906	Gold flowering stage	4.364
	SRR8316907	Gold flowering stage	0.981
	SRR8316908	Gold flowering stage	7.120
SRP132670	SRR6706286	Control	0.354
	SRR6706287	Light intensity 50%	0.213
	SRR6706288	Light intensity 20%	0.190
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.326
	CNS0095593	Slightly white alabastrum(diploid) 2	0.416
	CNS0095594	Slightly white alabastrum(diploid) 3	0.395
	CNS0095595	Whole white alabastrum(diploid) 2	0.606
	CNS0095596	Whole white alabastrum(diploid) 3	0.117
	CNS0095597	Whole white alabastrum(diploid) 4	0.259
	CNS0095598	Silvery flower (diploied) 1	0.462
	CNS0095599	Silvery flower (diploied) 2	0.752
	CNS0095600	Silvery flower (diploied) 3	0.447
	CNS0095601	Golden flower (diploid) 1	0.497
	CNS0095602	Golden flower (diploid) 2	1.504
	CNS0095603	Golden flower (diploid) 3	1.633
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.095
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.071
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.769
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.166
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.062
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.127
	CNS0095610	Silvery flower (tetraploid) 1	0.856
	CNS0095611	Silvery flower (tetraploid) 2	0.141
	CNS0095612	Silvery flower (tetraploid) 3	0.309
	CNS0095613	Golden flower (tetraploid) 1	1.174
	CNS0095614	Golden flower (tetraploid) 2	0.908
	CNS0095615	Golden flower (tetraploid) 3	0.838
CRA001975	CRR073297	Stem 1	0.259
	CRR073298	Stem 2	0.213
	CRR073299	Stem 3	0.213
	CRR073300	Leaf 1	0.244
	CRR073301	Leaf 2	0.378
	CRR073302	Leaf 3	0.181
	CRR073303	Juvenile bud 1	0.053
	CRR073304	Juvenile bud 2	0.235
	CRR073305	Juvenile bud 3	0.214
	CRR073306	Third green 1	0.156
	CRR073307	Third green 2	0.171
	CRR073308	Third green 3	0.150
	CRR073309	Second white 1	0.467
	CRR073310	Second white 2	0.226
	CRR073311	Second white 3	2.918
	CRR073312	Silver flowering 1	3.167
	CRR073313	Silver flowering 2	3.056
	CRR073314	Silver flowering 3	2.453
	CRR073315	Gold flowering 1	0.065
	CRR073316	Gold flowering 2	0.102
	CRR073317	Gold flowering 3	0.008
	CRR073318	Tawny withering 1	0.319
	CRR073319	Tawny withering 2	0.724
	CRR073320	Tawny withering 3	0.220