Gene detail

Detail information of GWHGAAZE009963

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270928.2	0	PREDICTED: proline-rich receptor-like protein kinase PERK15 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q8RWW0\|ALE2_ARATH	9E-77	Receptor-like serine/threonine-protein kinase ALE2 (Precursor)
trEMBL	tr\|B9GSU0\|B9GSU0_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE82047.2}
TAIR10	AT4G02010.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	120731135	120744881	-
GWHAAZE00000002	mRNA	120731135	120744881	-
GWHAAZE00000002	exon	120731135	120731509	-
GWHAAZE00000002	exon	120731656	120731803	-
GWHAAZE00000002	exon	120732090	120732165	-
GWHAAZE00000002	exon	120732284	120732658	-
GWHAAZE00000002	exon	120733591	120733800	-
GWHAAZE00000002	exon	120736099	120736202	-
GWHAAZE00000002	exon	120737045	120737066	-
GWHAAZE00000002	exon	120737766	120738137	-
GWHAAZE00000002	exon	120738442	120738897	-
GWHAAZE00000002	exon	120739732	120739843	-
GWHAAZE00000002	exon	120742160	120742228	-
GWHAAZE00000002	exon	120743236	120743316	-
GWHAAZE00000002	exon	120743481	120743527	-
GWHAAZE00000002	exon	120743672	120743771	-
GWHAAZE00000002	exon	120744056	120744157	-
GWHAAZE00000002	exon	120744504	120744602	-
GWHAAZE00000002	exon	120744720	120744881	-
GWHAAZE00000002	five_prime_UTR	120744843	120744881	-
GWHAAZE00000002	CDS	120744720	120744842	-
GWHAAZE00000002	CDS	120744504	120744602	-
GWHAAZE00000002	CDS	120744056	120744157	-
GWHAAZE00000002	CDS	120743672	120743771	-
GWHAAZE00000002	CDS	120743481	120743527	-
GWHAAZE00000002	CDS	120743236	120743316	-
GWHAAZE00000002	CDS	120742160	120742228	-
GWHAAZE00000002	CDS	120739732	120739843	-
GWHAAZE00000002	CDS	120738442	120738897	-
GWHAAZE00000002	CDS	120737766	120738137	-
GWHAAZE00000002	CDS	120737045	120737066	-
GWHAAZE00000002	CDS	120736099	120736202	-
GWHAAZE00000002	CDS	120733591	120733800	-
GWHAAZE00000002	CDS	120732284	120732658	-
GWHAAZE00000002	CDS	120732090	120732165	-
GWHAAZE00000002	CDS	120731656	120731803	-
GWHAAZE00000002	CDS	120731135	120731509	-

Transcript Sequence
>GWHTAAZE009975 CACCTAAATTTCACATATTCAGAGGAAAACTCTGATCAGATGGCTCTCGTTTGTCCTCTCGGCTTCTCTTCTGCTTCCCAACAGCTTTCACTCTCACACCTCAAACATCACTTTCCAAAACCTAGTTTTCGAGTCTCCTGTCTCTCTGCTCAACCGGAGCCGATAAATGCAACAGATACAAAAAATTCAAGACCTCAAGAATACCAGCCCGGCATCTTTGACAACCTCTTCCTTAATTTGTTCCGTAACAAAATGGTTCAGGAGGTTGGATGGGACTCGGAGAAGCCTGGATACAACGGATTAATAGAAGTGGCAAACCGTCTTATGATGGGAAGAAGCAACTCTGAAACTAAAGATGCTGCGGTTCGGATATTAAGGTCGCTATTTCCTCCATTGTTATTAGAGCTGTACCGAATGCTCATTACTCCTATTGGAGGCGGGAAAGTAGCTGCTTTGATGGTTGCAAGGGTGACTGCATTATCTTGTCAGTGGCTAATGGGATCATGCAAGGTGTTTGTTGAAAGATGCAAGTATTTGGAGGAGAGTAAATGTGTGGGCATATGTATCAATACTTGTAAGCTTCCTACACAGGCTTTCTTCAAGGATGAAATGGGGGTTCCTTTACTGATGGAGCCAAACTTCAGCGATTATAGTTGTCAGGTTTTTGCGCTCTTCTACGGAGCGATCTTGTCCCTCGCTTTTATTTACTCAGATCTGGACGCTTCTTCTTCGTATAAGCCGATGTCGGTGTTGTCTGTTTCTAGCAGCACTGGGGGATTGAAAAACCTGCAGATGTCATCACTGAAACAGTTTCTTGTGTTATGTTATATCTTATGCATCACTGATGCGGATTTACCCGACAACCAAGTGGAAGCACAAATTCTATCTCCAGCTATTACACCGTTGGTAGCACCTGCAATGCCTGAACTGCCTTTGCCGGCCAACATACCCTTATTTCATAAACCACTTCGGAGGCATCTTTCACCTCATGGTGCCCCAAAGATTTCAACTGGACCAGCTCAGCCCCCGAACTATGGCCCCCTGATAACTGTTGGTCACCCTCTCTCAAGTTCACGTCTATCCAAACCATCAATGAACAAGAACAGATTATTACCTCCAAGTGCTGGCCTTGCACCTCCACGCTTGGCGGATATTGCTCCAACACAATCCGGGGCTGGTACAATACCTCCCAGTCTAGTTCAGCCGCCACTATCTCCGTATGCTTCCAATTGTTGTGGACCAGACATGGTGCTCAAACGGGGGAGTCAGGATTGCAAGTGTGTGTATCCAATTAAGATTGACATTCTCCTTTTGAATGTCTCGTCTAATCCAAACTGGAACTTTTTCCTTGAAGAATTTGCTACCCAACTTGGATTGAGAGTTTCCCAGATTGAGCTAATCAACTTTTATCTACTCAGTTTATCAAGGCTTAATATCTCGATGGATATTACTCCACACACGGGAATCAGTTTCTCTGCTAGTGAAGCATATGGAATAAATTCTTCGCTTTCCATGCATAGGGTTCGTCTGGATCCTGCATTAGTGGGTGATTACAAACTTCTGAACATTACCTGGTTTAAGCCGGTTGTAACTGCTGAAGCCAAAGGTTATGGGCGTGAAGTAGAAGGAGGCTGCAAAGAATTCCAACACTTCCATCCACTTGCTTTGCTTGGTAGTGTTCTCAAATTGTTGGTCAAATCTTTGGAGATGCATTTGCTTTTCATCGCGCCTCTTATAGCTACACCAGTGGAAGCACCTCCACACATGCCCTCAACTCCTGCATCACTTGATTCTTCGAGCAAAGAGAAACATCCAAGTTTGATTCTTATTGTTGGAATTGGTGCTGCCATCCTGATCATTGTTATTATTGGTGTGCTAATAATTTGTTCATGTGCATCTCATAAAGGGAAAAAGCAATTATCTTCTGAAGAAACTGCTAAGCCAAGAGCAGTGGATGCCATTCCAGCTGGAGGAGGATCTCTTCCCCACCCAACTAGTACTCGGTTTCTCGCATATGAAGAGCTGAAAGAAGCAACAAATAACTTTGAATCTGCTAGCATACTTGGTGAGGGTGGATTTGGCAGAGTATTCAAGGGTGTGTTAAGTGACGGTACAGCGGTAGCAATTAAGAGGCTTACCACTGGAGGTCAACAAGGCGATAAAGAATTTTTAGTTGAGGTTGAGATGCTTAGTAGATTACATCACCGCAACCTTGTGAAACTTGTGGGCTATTATAGTAACCGCGATGCTTCACAAAACCTGCTTTGTTATGAGCTTGTCCCAAATGGAAGTTTGGAGGCCTGGCTTCATGGTCCCTTGGGTGTAAACTGTCCCCTGGACTGGGACACTAGAATGAAGATTGCCCTTGATGCTGCTAGAGGACTTGCGTATGTAGCCCCTGAATATGCTATGACGGGGCATCTATTAGTAAAAAGTGATGTGTACAGTTACGGGGTTGTCCTCCTTGAATTATTGACCGGCAGGAAGCCTGTGGATATGTCACAACCATCAGGACAGGAGAATCTAGTCACCTGGTCCAGGCCAATACTTAGAGATAAGGATCGTTTGGAAGAACTTGCTGATCCGAAGCTGGGAGGGAAGTACCCAAAGGAAGATTTTATAAGGGTGTGCACCATAGCGGCAGCTTGTGTAGCCCCAGAGGCAAGCCAAAGGCCCACAATGGGAGAAGTGGTACAGTCGCTTAAAATGGTGCAGCGCATAATGGAGTATCAAGATTCTGTGCTAGCATCCAACGCAAGGCCCAACCTGAGGCAGTCGTCAACTACTTTTGAGTCAGATGGCACATCTTCGATGTTCTCTTCTGGTCCATACTCTGGCCTAAGTGCCTTTGATAATGAAAATATCTCTCGGACTGCCGTGTTTTCTGAAGATCTTCATGAAGGACGATGA

Network for GWHGAAZE009963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13225.7	DUF4033	151	208	1.00E-25
PF07714.18	PK_Tyr_Ser-Thr	673	785	3.60E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_Extensin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.897
	SRR3591706	second leaf	26.581
	SRR3591707	mature leaf	28.426
	SRR3591708	Shoot apex	27.800
	SRR3591709	Stem	29.094
	SRR3591710	White floral bud	25.568
	SRR3591711	White flower	23.826
	SRR3591712	Green floral bud	21.951
	SRR3591713	Yellow flower	23.251
SRP173429	SRR8316895	Juvenile bud stage	14.726
	SRR8316896	Juvenile bud stage	18.577
	SRR8316897	Juvenile bud stage	9.334
	SRR8316894	Third green stage	9.490
	SRR8316900	Third green stage	26.908
	SRR8316901	Third green stage	24.045
	SRR8316898	Complete white stage	16.538
	SRR8316899	Complete white stage	39.352
	SRR8316903	Complete white stage	23.805
	SRR8316902	Silver flowering stage	16.490
	SRR8316904	Silver flowering stage	21.703
	SRR8316905	Silver flowering stage	11.111
	SRR8316906	Gold flowering stage	34.391
	SRR8316907	Gold flowering stage	34.823
	SRR8316908	Gold flowering stage	38.114
SRP132670	SRR6706286	Control	25.553
	SRR6706287	Light intensity 50%	25.534
	SRR6706288	Light intensity 20%	27.824
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.277
	CNS0095593	Slightly white alabastrum(diploid) 2	13.791
	CNS0095594	Slightly white alabastrum(diploid) 3	11.169
	CNS0095595	Whole white alabastrum(diploid) 2	13.787
	CNS0095596	Whole white alabastrum(diploid) 3	12.610
	CNS0095597	Whole white alabastrum(diploid) 4	12.704
	CNS0095598	Silvery flower (diploied) 1	15.372
	CNS0095599	Silvery flower (diploied) 2	13.907
	CNS0095600	Silvery flower (diploied) 3	25.729
	CNS0095601	Golden flower (diploid) 1	13.439
	CNS0095602	Golden flower (diploid) 2	20.483
	CNS0095603	Golden flower (diploid) 3	21.024
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.893
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.514
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.527
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.269
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.835
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.566
	CNS0095610	Silvery flower (tetraploid) 1	24.291
	CNS0095611	Silvery flower (tetraploid) 2	25.616
	CNS0095612	Silvery flower (tetraploid) 3	27.087
	CNS0095613	Golden flower (tetraploid) 1	13.487
	CNS0095614	Golden flower (tetraploid) 2	20.467
	CNS0095615	Golden flower (tetraploid) 3	20.125
CRA001975	CRR073297	Stem 1	25.179
	CRR073298	Stem 2	21.494
	CRR073299	Stem 3	21.828
	CRR073300	Leaf 1	28.321
	CRR073301	Leaf 2	25.214
	CRR073302	Leaf 3	20.476
	CRR073303	Juvenile bud 1	25.736
	CRR073304	Juvenile bud 2	21.628
	CRR073305	Juvenile bud 3	27.776
	CRR073306	Third green 1	19.234
	CRR073307	Third green 2	16.102
	CRR073308	Third green 3	17.450
	CRR073309	Second white 1	20.299
	CRR073310	Second white 2	17.098
	CRR073311	Second white 3	16.485
	CRR073312	Silver flowering 1	11.643
	CRR073313	Silver flowering 2	14.054
	CRR073314	Silver flowering 3	12.671
	CRR073315	Gold flowering 1	17.864
	CRR073316	Gold flowering 2	21.852
	CRR073317	Gold flowering 3	15.652
	CRR073318	Tawny withering 1	18.783
	CRR073319	Tawny withering 2	13.907
	CRR073320	Tawny withering 3	16.331