Gene detail

Detail information of GWHGAAZE009943

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011079583.1	0	PREDICTED: dnaJ protein ERDJ3B [Sesamum indicum]
Swissprot	tr\|Q9LZK5\|DNJ19_ARATH	0	DnaJ protein ERDJ3B (Precursor)
trEMBL	tr\|A0A068V951\|A0A068V951_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_144 {ECO:0000313\|EMBL:CDP17087.1}
TAIR10	AT3G62600.1	1E-156	DNAJ heat shock family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	120342834	120348003	+
GWHAAZE00000002	mRNA	120342834	120348003	+
GWHAAZE00000002	exon	120342834	120342904	+
GWHAAZE00000002	exon	120342997	120343145	+
GWHAAZE00000002	exon	120343288	120343417	+
GWHAAZE00000002	exon	120344622	120344733	+
GWHAAZE00000002	exon	120345807	120345923	+
GWHAAZE00000002	exon	120346106	120346192	+
GWHAAZE00000002	exon	120346732	120346791	+
GWHAAZE00000002	exon	120346879	120346956	+
GWHAAZE00000002	exon	120347484	120347555	+
GWHAAZE00000002	exon	120347670	120348003	+
GWHAAZE00000002	CDS	120342834	120342904	+
GWHAAZE00000002	CDS	120342997	120343145	+
GWHAAZE00000002	CDS	120343288	120343417	+
GWHAAZE00000002	CDS	120344622	120344733	+
GWHAAZE00000002	CDS	120345807	120345923	+
GWHAAZE00000002	CDS	120346106	120346192	+
GWHAAZE00000002	CDS	120346732	120346791	+
GWHAAZE00000002	CDS	120346879	120346956	+
GWHAAZE00000002	CDS	120347484	120347555	+
GWHAAZE00000002	CDS	120347670	120347828	+
GWHAAZE00000002	three_prime_UTR	120347829	120348003	+

Transcript Sequence
>GWHTAAZE009955 ATGGCGCATCAGAGATCGAAGCTATTCTTCCTATTATGCTTTCTATTCCACGCTTTAATTGCCATTGCAGCGAAGAGTTATTATGATATTCTTCAAGTTCCAAAAGGTGCGTCAGACGATCAGATCAAACGAGCATATAGGAAGCTGGCATTGAGGTATCATCCCGATAAGAACCAGGGCAATGAGGAGGCTAACAAGAAATTTGCTGAGATCAACAATGCTTATGAAGTGCTATCTGATAGTGAGAAGAGGGGAATATACGATAGGTATGGTGAAGATGGTCTTAAGCAACATGCTGCCAGTGGAGGAAGAGGAGGAGGAGGGATGAACATTCAAGACATATTTAGCTCGTTTTTCGGTGGAGGTACAATGGAAGAGGAAGAGAAAATTGTGAAAGGTGATGATGTCATTGTTGAATTGGATGCCTCTTTGGAGGATCTTTACATGGGAGGATCATTGAAGGTTTGGAGGGAGAAAAATATTTTAAAGCCAGCCCCTGGAAAGAGGCGCTGTAACTGTAGAAATGAGGTCTATCACAAGCAAATCGGTCCGGGGATGTTCCAGCAGATGACAGAGCAGGTTTGTGAACAATGCCCAAATGTGAAATATGAAAGGGAGGGGTACTTTGTCACTGTGGATATTGAGAAAGGAATGCAAGATGGGCAAGAGGTGGTCTTTTATGAAGATGGTGAGCCTATAATAGACGGGGAGGCTGGTGATCTCAAGTTTCGTATTCGGACAGCACCCCATGATACTTTTAGAAGGGAAGGAAATGACCTCCGCACAACTGTTACTATAACTCTGGTGCAAGCTCTTGTCGGTTTTGAGAAGAAAATTAAACACCTTGATGAACATCTAGTGGACATCAGCTCAAAGGGAATTACAAGGCCTAAGGAAGTGAGGAAGTTTAAAGGTGAAGGGATGCCATTACACTTTAGTAACAAGAAGGGAGATTTATACATCACTTTTGAGGTACTTTTCCCTACCTCTCTGTCAGAGGACCAGAAGAGCAAGATCAAAGCAGTTCTTGGATAGCTTAGCTTACAGGATTAAAATAATTTTTTTCTTTGGGTATTCGCACTGTAACATGAACAATGTTTATATAGCAGATTCAGTCCACTTGGAGATTTTTTCCCCTTTTTCTCCCAACGAGTCATGGAACTCTTTAACAACAATAGGCTGTTCAACCTGAATTTTTGTAGTAAAATTG

Network for GWHGAAZE009943

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	27	88	1.10E-28
PF01556.19	DnaJ_C	138	328	1.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09517	DNAJB11	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	98.587
	SRR3591706	second leaf	49.666
	SRR3591707	mature leaf	47.794
	SRR3591708	Shoot apex	83.654
	SRR3591709	Stem	59.487
	SRR3591710	White floral bud	72.380
	SRR3591711	White flower	75.646
	SRR3591712	Green floral bud	85.976
	SRR3591713	Yellow flower	224.079
SRP173429	SRR8316895	Juvenile bud stage	90.364
	SRR8316896	Juvenile bud stage	112.906
	SRR8316897	Juvenile bud stage	69.321
	SRR8316894	Third green stage	44.810
	SRR8316900	Third green stage	130.430
	SRR8316901	Third green stage	126.705
	SRR8316898	Complete white stage	36.051
	SRR8316899	Complete white stage	82.569
	SRR8316903	Complete white stage	74.046
	SRR8316902	Silver flowering stage	51.861
	SRR8316904	Silver flowering stage	73.673
	SRR8316905	Silver flowering stage	46.342
	SRR8316906	Gold flowering stage	131.140
	SRR8316907	Gold flowering stage	139.596
	SRR8316908	Gold flowering stage	96.191
SRP132670	SRR6706286	Control	48.605
	SRR6706287	Light intensity 50%	47.734
	SRR6706288	Light intensity 20%	45.595
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	161.341
	CNS0095593	Slightly white alabastrum(diploid) 2	136.352
	CNS0095594	Slightly white alabastrum(diploid) 3	187.196
	CNS0095595	Whole white alabastrum(diploid) 2	121.387
	CNS0095596	Whole white alabastrum(diploid) 3	114.642
	CNS0095597	Whole white alabastrum(diploid) 4	101.273
	CNS0095598	Silvery flower (diploied) 1	163.470
	CNS0095599	Silvery flower (diploied) 2	112.827
	CNS0095600	Silvery flower (diploied) 3	74.001
	CNS0095601	Golden flower (diploid) 1	77.236
	CNS0095602	Golden flower (diploid) 2	149.365
	CNS0095603	Golden flower (diploid) 3	144.026
	CNS0095604	Slightly white alabastrum(tetraploid) 1	119.981
	CNS0095605	Slightly white alabastrum(tetraploid) 2	128.229
	CNS0095606	Slightly white alabastrum(tetraploid) 3	113.269
	CNS0095607	Whole white alabastrum(tetraploid) 1	103.744
	CNS0095608	Whole white alabastrum(tetraploid) 2	79.614
	CNS0095609	Whole white alabastrum(tetraploid) 3	138.557
	CNS0095610	Silvery flower (tetraploid) 1	97.380
	CNS0095611	Silvery flower (tetraploid) 2	50.701
	CNS0095612	Silvery flower (tetraploid) 3	43.766
	CNS0095613	Golden flower (tetraploid) 1	72.712
	CNS0095614	Golden flower (tetraploid) 2	85.540
	CNS0095615	Golden flower (tetraploid) 3	83.390
CRA001975	CRR073297	Stem 1	46.834
	CRR073298	Stem 2	49.058
	CRR073299	Stem 3	30.688
	CRR073300	Leaf 1	47.184
	CRR073301	Leaf 2	46.879
	CRR073302	Leaf 3	32.013
	CRR073303	Juvenile bud 1	28.087
	CRR073304	Juvenile bud 2	28.528
	CRR073305	Juvenile bud 3	26.178
	CRR073306	Third green 1	10.087
	CRR073307	Third green 2	10.100
	CRR073308	Third green 3	13.870
	CRR073309	Second white 1	13.503
	CRR073310	Second white 2	12.223
	CRR073311	Second white 3	11.929
	CRR073312	Silver flowering 1	33.960
	CRR073313	Silver flowering 2	33.361
	CRR073314	Silver flowering 3	56.626
	CRR073315	Gold flowering 1	13.648
	CRR073316	Gold flowering 2	19.003
	CRR073317	Gold flowering 3	7.238
	CRR073318	Tawny withering 1	39.929
	CRR073319	Tawny withering 2	42.200
	CRR073320	Tawny withering 3	33.968