Gene detail

Detail information of GWHGAAZE009923

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17103.1	1.2171E-129	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LUQ6\|RL192_ARATH	1E-123	60S ribosomal protein L19-2
trEMBL	tr\|A0A068VBP6\|A0A068VBP6_COFCA	5E-130	Ribosomal protein L19 {ECO:0000256\|RuleBase:RU000574}
TAIR10	AT1G02780.1	1E-87	Ribosomal protein L19e family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	119901532	119905265	+
GWHAAZE00000002	mRNA	119901532	119905265	+
GWHAAZE00000002	exon	119901532	119901643	+
GWHAAZE00000002	exon	119903553	119903675	+
GWHAAZE00000002	exon	119904025	119904338	+
GWHAAZE00000002	exon	119904766	119904824	+
GWHAAZE00000002	exon	119904905	119905265	+
GWHAAZE00000002	CDS	119901532	119901643	+
GWHAAZE00000002	CDS	119903553	119903675	+
GWHAAZE00000002	CDS	119904025	119904338	+
GWHAAZE00000002	CDS	119904766	119904824	+
GWHAAZE00000002	CDS	119904905	119904929	+
GWHAAZE00000002	three_prime_UTR	119904930	119905265	+

Transcript Sequence
>GWHTAAZE009935 ATGGTGTCGCTGAAGCTGCAGAAGAGGCTTGCTGCCAGTGTACTGAAGTGTGGGAAGGGAAAGGTTTGGCTCGATCCAAATGAAGTCAGTGAAATCTCCATGGCTAACTCTCGGCAAAATGTGAGAAAGCTTGTGAAGGATGGTTTTATCATCAGGAAACCAACAAAGATTCACTCGCGATCACGTGCACGTCGAATGAAGGAAGCCAAGAGAAAGGGGCGTCATTCTGGATATGGTAAGCGCAAGGGTACAAGGGAGGCTAGGTTGCCCACAAAAATTCTATGGATGAGGAGGATGAGGGTGCTCAGGCGCTTGCTTCGGAAGTATCGGGAATCTAAGAAGATTGACAAGCACATGTATCATGACATGTACATGAAGGTGAAGGGTAATGTTTTTAAGAACAAGCGTGTCCTAATGGAGAGCATCCACAAATCAAAGGCTGAGAAGGCTAGGGAGAAGACGCTGTCTGACCAGTTTGAGGCTAAGCGTGCAAAGAATAAGGCAAGCAGGGAAAGAAAGCTTGCAAGGAGGGAGGAACGCTTTGCCCAGGGACCTGGAGAAAAACCGGTGCAACCAGCAGCTGCTGCTACCCCAGCCCAAACAACGCAGGGAACTAAGAAATCGAAGAAGTGAGGCCGTCATTGAAGAGCATGGAAGAGGAGTGCCTGCTTATCGATTTATTGTCGGTAGTATGGCGTTTAGGTTTTTTTTGACAAGTATTGGAATTTTGCCTAATGTTTTTTCAGTTTTTTATGCTATCAACATATTTTTAATCTAGATGGAAGGAGAATTAAAGCCGATACAATGCTTGGATTCTAGCACGTCATGTTTATTGTTGTTCAATTTCTTATAATTTCCGTCATATGTGCATCATTTTTGGATGAGTGAAATTTTGGTACCTTAGGAATTTGGTTAAACTAATATCTGCAAGTAACATTGTTTGTCTCAATACCGAACTATTGGTTTCTC

Network for GWHGAAZE009923

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01280.21	Ribosomal_L19e	4	145	7.40E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02885	RP-L19e, RPL19	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0022625	cellular_component	cytosolic large ribosomal subunit
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	150.052
	SRR3591706	second leaf	86.726
	SRR3591707	mature leaf	22.438
	SRR3591708	Shoot apex	208.224
	SRR3591709	Stem	56.713
	SRR3591710	White floral bud	50.017
	SRR3591711	White flower	54.048
	SRR3591712	Green floral bud	155.438
	SRR3591713	Yellow flower	27.538
SRP173429	SRR8316895	Juvenile bud stage	127.792
	SRR8316896	Juvenile bud stage	208.125
	SRR8316897	Juvenile bud stage	101.561
	SRR8316894	Third green stage	73.374
	SRR8316900	Third green stage	207.944
	SRR8316901	Third green stage	213.551
	SRR8316898	Complete white stage	19.443
	SRR8316899	Complete white stage	105.953
	SRR8316903	Complete white stage	40.220
	SRR8316902	Silver flowering stage	20.240
	SRR8316904	Silver flowering stage	18.087
	SRR8316905	Silver flowering stage	8.983
	SRR8316906	Gold flowering stage	27.156
	SRR8316907	Gold flowering stage	31.834
	SRR8316908	Gold flowering stage	42.496
SRP132670	SRR6706286	Control	280.941
	SRR6706287	Light intensity 50%	278.533
	SRR6706288	Light intensity 20%	285.588
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	272.741
	CNS0095593	Slightly white alabastrum(diploid) 2	284.047
	CNS0095594	Slightly white alabastrum(diploid) 3	282.192
	CNS0095595	Whole white alabastrum(diploid) 2	193.596
	CNS0095596	Whole white alabastrum(diploid) 3	224.343
	CNS0095597	Whole white alabastrum(diploid) 4	137.792
	CNS0095598	Silvery flower (diploied) 1	79.900
	CNS0095599	Silvery flower (diploied) 2	71.835
	CNS0095600	Silvery flower (diploied) 3	41.738
	CNS0095601	Golden flower (diploid) 1	59.025
	CNS0095602	Golden flower (diploid) 2	31.421
	CNS0095603	Golden flower (diploid) 3	31.417
	CNS0095604	Slightly white alabastrum(tetraploid) 1	244.648
	CNS0095605	Slightly white alabastrum(tetraploid) 2	247.171
	CNS0095606	Slightly white alabastrum(tetraploid) 3	223.905
	CNS0095607	Whole white alabastrum(tetraploid) 1	120.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	93.360
	CNS0095609	Whole white alabastrum(tetraploid) 3	177.020
	CNS0095610	Silvery flower (tetraploid) 1	46.134
	CNS0095611	Silvery flower (tetraploid) 2	30.649
	CNS0095612	Silvery flower (tetraploid) 3	17.721
	CNS0095613	Golden flower (tetraploid) 1	24.380
	CNS0095614	Golden flower (tetraploid) 2	42.061
	CNS0095615	Golden flower (tetraploid) 3	8.758
CRA001975	CRR073297	Stem 1	220.424
	CRR073298	Stem 2	216.777
	CRR073299	Stem 3	227.306
	CRR073300	Leaf 1	169.906
	CRR073301	Leaf 2	197.681
	CRR073302	Leaf 3	222.635
	CRR073303	Juvenile bud 1	152.339
	CRR073304	Juvenile bud 2	109.227
	CRR073305	Juvenile bud 3	149.286
	CRR073306	Third green 1	9.320
	CRR073307	Third green 2	8.379
	CRR073308	Third green 3	15.286
	CRR073309	Second white 1	9.057
	CRR073310	Second white 2	10.132
	CRR073311	Second white 3	4.865
	CRR073312	Silver flowering 1	7.395
	CRR073313	Silver flowering 2	14.950
	CRR073314	Silver flowering 3	11.933
	CRR073315	Gold flowering 1	36.176
	CRR073316	Gold flowering 2	56.021
	CRR073317	Gold flowering 3	33.631
	CRR073318	Tawny withering 1	168.039
	CRR073319	Tawny withering 2	148.318
	CRR073320	Tawny withering 3	194.163