Detail information of GWHGAAZE009913


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270067.10PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Vitis vinifera]
Swissprottr|Q39659|MFPA_CUCSA03-hydroxyacyl-CoA dehydrogenase
trEMBLtr|F6H6Y0|F6H6Y0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB48030.1}
TAIR10AT3G06860.10multifunctional protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene119709488119715961-
GWHAAZE00000002mRNA119709488119715961-
GWHAAZE00000002exon119715865119715961-
GWHAAZE00000002exon119715233119715304-
GWHAAZE00000002exon119715070119715144-
GWHAAZE00000002exon119714942119714995-
GWHAAZE00000002exon119714777119714844-
GWHAAZE00000002exon119714600119714681-
GWHAAZE00000002exon119713947119714002-
GWHAAZE00000002exon119713544119713846-
GWHAAZE00000002exon119713377119713463-
GWHAAZE00000002exon119712750119712924-
GWHAAZE00000002exon119712532119712653-
GWHAAZE00000002exon119711405119711568-
GWHAAZE00000002exon119711069119711323-
GWHAAZE00000002exon119710806119710927-
GWHAAZE00000002exon119710615119710718-
GWHAAZE00000002exon119710169119710317-
GWHAAZE00000002exon119709951119710089-
GWHAAZE00000002exon119709488119709523-
GWHAAZE00000002CDS119715865119715961-
GWHAAZE00000002CDS119715233119715304-
GWHAAZE00000002CDS119715070119715144-
GWHAAZE00000002CDS119714942119714995-
GWHAAZE00000002CDS119714777119714844-
GWHAAZE00000002CDS119714600119714681-
GWHAAZE00000002CDS119713947119714002-
GWHAAZE00000002CDS119713544119713846-
GWHAAZE00000002CDS119713377119713463-
GWHAAZE00000002CDS119712750119712924-
GWHAAZE00000002CDS119712532119712653-
GWHAAZE00000002CDS119711405119711568-
GWHAAZE00000002CDS119711069119711323-
GWHAAZE00000002CDS119710806119710927-
GWHAAZE00000002CDS119710615119710718-
GWHAAZE00000002CDS119710169119710317-
GWHAAZE00000002CDS119709951119710089-
GWHAAZE00000002CDS119709488119709523-
Transcript Sequence

Network for GWHGAAZE009913

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00378.21ECH_1132081.70E-35
PF02737.193HCDH_N3144935.10E-59
PF00725.233HCDH4955881.80E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10527MFP2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Fatty acid metabolismmap01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0006631biological_processfatty acid metabolic process
GO:0003857molecular_function3-hydroxyacyl-CoA dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.591
SRR3591706second leaf13.649
SRR3591707mature leaf13.798
SRR3591708Shoot apex13.774
SRR3591709Stem13.795
SRR3591710White floral bud20.538
SRR3591711White flower22.085
SRR3591712Green floral bud10.523
SRR3591713Yellow flower13.790
SRP173429 SRR8316895Juvenile bud stage 13.944
SRR8316896Juvenile bud stage 16.667
SRR8316897Juvenile bud stage 6.839
SRR8316894Third green stage 8.648
SRR8316900Third green stage 22.604
SRR8316901Third green stage 22.253
SRR8316898Complete white stage 13.487
SRR8316899Complete white stage 24.789
SRR8316903Complete white stage 21.794
SRR8316902Silver flowering stage15.280
SRR8316904Silver flowering stage24.397
SRR8316905Silver flowering stage12.338
SRR8316906Gold flowering stage 31.302
SRR8316907Gold flowering stage 36.196
SRR8316908Gold flowering stage 27.354
SRP132670SRR6706286Control17.109
SRR6706287Light intensity 50%18.869
SRR6706288Light intensity 20%21.034
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.396
CNS0095593Slightly white alabastrum(diploid) 29.400
CNS0095594Slightly white alabastrum(diploid) 39.100
CNS0095595Whole white alabastrum(diploid) 29.862
CNS0095596Whole white alabastrum(diploid) 37.369
CNS0095597Whole white alabastrum(diploid) 47.958
CNS0095598Silvery flower (diploied) 122.028
CNS0095599Silvery flower (diploied) 219.958
CNS0095600Silvery flower (diploied) 329.344
CNS0095601Golden flower (diploid) 115.855
CNS0095602Golden flower (diploid) 221.719
CNS0095603Golden flower (diploid) 320.177
CNS0095604Slightly white alabastrum(tetraploid) 114.652
CNS0095605Slightly white alabastrum(tetraploid) 211.092
CNS0095606Slightly white alabastrum(tetraploid) 334.917
CNS0095607Whole white alabastrum(tetraploid) 16.674
CNS0095608Whole white alabastrum(tetraploid) 25.218
CNS0095609Whole white alabastrum(tetraploid) 325.724
CNS0095610Silvery flower (tetraploid) 139.304
CNS0095611Silvery flower (tetraploid) 233.696
CNS0095612Silvery flower (tetraploid) 350.433
CNS0095613Golden flower (tetraploid) 112.972
CNS0095614Golden flower (tetraploid) 218.748
CNS0095615Golden flower (tetraploid) 313.775
CRA001975CRR073297Stem 113.577
CRR073298Stem 212.095
CRR073299Stem 310.943
CRR073300Leaf 113.794
CRR073301Leaf 29.627
CRR073302Leaf 312.596
CRR073303Juvenile bud 19.885
CRR073304Juvenile bud 210.924
CRR073305Juvenile bud 310.936
CRR073306Third green 116.729
CRR073307Third green 211.574
CRR073308Third green 313.043
CRR073309Second white 116.482
CRR073310Second white 219.771
CRR073311Second white 317.190
CRR073312Silver flowering 14.961
CRR073313Silver flowering 23.830
CRR073314Silver flowering 35.024
CRR073315Gold flowering 19.800
CRR073316Gold flowering 216.154
CRR073317Gold flowering 310.507
CRR073318Tawny withering 18.265
CRR073319Tawny withering 25.270
CRR073320Tawny withering 35.903