Gene detail

Detail information of GWHGAAZE009900

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002321005.1	UDP-XYLOSE SYNTHASE 4 family protein [Populus trichocarpa]
Swissprot	tr\|Q8S8T4\|UXS4_ARATH	UDP-glucuronic acid decarboxylase 4
trEMBL	tr\|A9PD45\|A9PD45_POPTR	UDP-XYLOSE SYNTHASE 4 family protein {ECO:0000313\|EMBL:EEE99320.1}
TAIR10	AT2G47650.1	UDP-xylose synthase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	119467387	119470772	+
GWHAAZE00000002	mRNA	119467387	119470772	+
GWHAAZE00000002	exon	119467387	119467893	+
GWHAAZE00000002	exon	119468000	119468144	+
GWHAAZE00000002	exon	119468542	119468621	+
GWHAAZE00000002	exon	119468745	119468828	+
GWHAAZE00000002	exon	119468946	119469020	+
GWHAAZE00000002	exon	119469960	119470052	+
GWHAAZE00000002	exon	119470521	119470772	+
GWHAAZE00000002	CDS	119467387	119467893	+
GWHAAZE00000002	CDS	119468000	119468144	+
GWHAAZE00000002	CDS	119468542	119468621	+
GWHAAZE00000002	CDS	119468745	119468828	+
GWHAAZE00000002	CDS	119468946	119469020	+
GWHAAZE00000002	CDS	119469960	119470052	+
GWHAAZE00000002	CDS	119470521	119470772	+

Transcript Sequence
>GWHTAAZE009912 ATGGCTCAACGTGGTTCGACCCATCCGCTACATGCTTCGCGAACAGCGTCTCATCTTCGTCTTCGTCGGCATTGCTATTGCCACTCTCGTTTTCAGCCTCATCCCCTCCAATCAATCTTACCCCCAGCAGCAGCAAAACAACACGGCCGGATCGCTCTCTCCGATCAGTTTGAGTTGAGTCAACCCTCCGTCTACCACCGCATTGCATCCTTCCATTCGGGGGGTAAGATACCTTTGGGCCTTAAAAGGAAAGGTCTGAGGATTGTGGTCACCGGTGGGGCCGGGTTCGTCGGTAGCCACCTCGTGGACCGTCTGATTGCTAGAGGGGATAGCGTGATCGTCGTTGATAATTTCTTTACTGGGCGTAAAGAGAACGTGATGCACCATTTTCGAAACCCTAGGTTTGAGCTTATTAGACACGACGTCGTTGAGCCGCTTTTGCTGGAGGTGGATCAGATCTACCATCTCGCTTGCCCTGCCTCTCCCGTTCATTACAAGCACAATCCTACCAATGTGGTGGGGACTCTGAACATGCTAGGGCTGGCGAAAAGAGTCGGTGCCCGGTTTCTGCTAACGAGCACCAGTGAGGTGTACGGAGATCCTCTGCAGCACCCTCAGGTCGAGACCTACTGGGGAAACGTCAATCCAATCGGTGTCCGTAGTTGTTACGACGAGGGAAAGCGTACTGCCGAAACATTGACCATGGACTACCACAGAGGTGCTGGTGTTGAGGTGAGAATTGCTAGGATATTTAACACTTATGGGCCTAGGATGTGTATTGATGATGGGCGTGTTGTTAGTAATTTTGTTGCCCAGGCCTTGAGGAAAATGCCATTGACAGTGTATGGGGATGGGAAGCAAACGAGGAGTTTCCAATATGTTTCTGATTTGGTGGAAGGTCTAATGAGGCTGATGGAAGGAGAACATGTGGGCCCGTTCAATCTTGGAAATCCTGGTGAATTCACCATGCTTGAACTTGCTCAGGTGGTGCAAGAAACCATAGATCCGAATGCAAAGATAGAATTCAGGCCAAACACAGAGGATGATCCCCACAAGAGGAAGCCTGATATAACCAAAGCTAAGGACCAGCTTGGTTGGGAGCCAAAGGTAGCCCTTCGCAAGGGTCTCCCTCTGATGGTCTCTGACTTCAGGCAGCGCATTTTTGGCGACCACAAGGATCAATCTACTACTACTATGACTAGAACAAAAGCAGTAGAAGCAGAAGCAACAGATTGA

Network for GWHGAAZE009900

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	90	377	5.90E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08678	UXS1, uxs	Metabolic pathways	map01100
K08678	UXS1, uxs	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	315.718
	SRR3591706	second leaf	160.242
	SRR3591707	mature leaf	42.738
	SRR3591708	Shoot apex	201.733
	SRR3591709	Stem	166.108
	SRR3591710	White floral bud	358.004
	SRR3591711	White flower	237.116
	SRR3591712	Green floral bud	288.275
	SRR3591713	Yellow flower	119.136
SRP173429	SRR8316895	Juvenile bud stage	242.536
	SRR8316896	Juvenile bud stage	360.514
	SRR8316897	Juvenile bud stage	172.059
	SRR8316894	Third green stage	86.134
	SRR8316900	Third green stage	273.127
	SRR8316901	Third green stage	311.792
	SRR8316898	Complete white stage	91.542
	SRR8316899	Complete white stage	274.324
	SRR8316903	Complete white stage	141.297
	SRR8316902	Silver flowering stage	100.145
	SRR8316904	Silver flowering stage	121.035
	SRR8316905	Silver flowering stage	38.919
	SRR8316906	Gold flowering stage	151.349
	SRR8316907	Gold flowering stage	189.243
	SRR8316908	Gold flowering stage	174.220
SRP132670	SRR6706286	Control	207.407
	SRR6706287	Light intensity 50%	231.782
	SRR6706288	Light intensity 20%	232.281
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	311.581
	CNS0095593	Slightly white alabastrum(diploid) 2	329.598
	CNS0095594	Slightly white alabastrum(diploid) 3	361.720
	CNS0095595	Whole white alabastrum(diploid) 2	431.985
	CNS0095596	Whole white alabastrum(diploid) 3	374.589
	CNS0095597	Whole white alabastrum(diploid) 4	351.106
	CNS0095598	Silvery flower (diploied) 1	258.390
	CNS0095599	Silvery flower (diploied) 2	340.010
	CNS0095600	Silvery flower (diploied) 3	151.556
	CNS0095601	Golden flower (diploid) 1	227.086
	CNS0095602	Golden flower (diploid) 2	185.482
	CNS0095603	Golden flower (diploid) 3	180.631
	CNS0095604	Slightly white alabastrum(tetraploid) 1	306.027
	CNS0095605	Slightly white alabastrum(tetraploid) 2	305.670
	CNS0095606	Slightly white alabastrum(tetraploid) 3	231.355
	CNS0095607	Whole white alabastrum(tetraploid) 1	382.796
	CNS0095608	Whole white alabastrum(tetraploid) 2	352.210
	CNS0095609	Whole white alabastrum(tetraploid) 3	238.767
	CNS0095610	Silvery flower (tetraploid) 1	128.683
	CNS0095611	Silvery flower (tetraploid) 2	86.391
	CNS0095612	Silvery flower (tetraploid) 3	155.871
	CNS0095613	Golden flower (tetraploid) 1	45.297
	CNS0095614	Golden flower (tetraploid) 2	145.845
	CNS0095615	Golden flower (tetraploid) 3	86.256
CRA001975	CRR073297	Stem 1	251.147
	CRR073298	Stem 2	246.759
	CRR073299	Stem 3	231.732
	CRR073300	Leaf 1	279.201
	CRR073301	Leaf 2	302.171
	CRR073302	Leaf 3	276.637
	CRR073303	Juvenile bud 1	227.701
	CRR073304	Juvenile bud 2	168.310
	CRR073305	Juvenile bud 3	171.868
	CRR073306	Third green 1	185.359
	CRR073307	Third green 2	221.239
	CRR073308	Third green 3	259.125
	CRR073309	Second white 1	196.388
	CRR073310	Second white 2	144.756
	CRR073311	Second white 3	133.964
	CRR073312	Silver flowering 1	328.462
	CRR073313	Silver flowering 2	448.412
	CRR073314	Silver flowering 3	464.123
	CRR073315	Gold flowering 1	66.506
	CRR073316	Gold flowering 2	82.843
	CRR073317	Gold flowering 3	81.178
	CRR073318	Tawny withering 1	299.812
	CRR073319	Tawny withering 2	328.660
	CRR073320	Tawny withering 3	245.884