Detail information of GWHGAAZE009861


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010652064.12.90851E-31PREDICTED: zinc finger CCCH domain-containing protein 32 [Vitis vinifera]
Swissprottr|Q84W91|C3H32_ARATH1E-20Zinc finger CCCH domain-containing protein 32
trEMBLtr|D7TP30|D7TP30_VITVI1E-31Putative uncharacterized protein {ECO:0000313|EMBL:CBI32253.3}
TAIR10AT2G47850.24E-11Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene118740685118741414-
GWHAAZE00000002mRNA118740685118741414-
GWHAAZE00000002exon118741394118741414-
GWHAAZE00000002exon118740685118741050-
GWHAAZE00000002CDS118741394118741414-
GWHAAZE00000002CDS118740685118741050-
Transcript Sequence

Network for GWHGAAZE009861

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.25zf-CCCH9323.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.578
SRR3591706second leaf28.450
SRR3591707mature leaf23.805
SRR3591708Shoot apex39.984
SRR3591709Stem27.591
SRR3591710White floral bud34.322
SRR3591711White flower19.559
SRR3591712Green floral bud45.138
SRR3591713Yellow flower16.089
SRP173429 SRR8316895Juvenile bud stage 19.584
SRR8316896Juvenile bud stage 33.018
SRR8316897Juvenile bud stage 10.839
SRR8316894Third green stage 13.714
SRR8316900Third green stage 36.032
SRR8316901Third green stage 43.091
SRR8316898Complete white stage 7.752
SRR8316899Complete white stage 30.674
SRR8316903Complete white stage 11.378
SRR8316902Silver flowering stage6.458
SRR8316904Silver flowering stage6.076
SRR8316905Silver flowering stage3.688
SRR8316906Gold flowering stage 10.843
SRR8316907Gold flowering stage 12.219
SRR8316908Gold flowering stage 9.288
SRP132670SRR6706286Control27.313
SRR6706287Light intensity 50%25.137
SRR6706288Light intensity 20%27.486
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.359
CNS0095593Slightly white alabastrum(diploid) 250.849
CNS0095594Slightly white alabastrum(diploid) 355.968
CNS0095595Whole white alabastrum(diploid) 273.407
CNS0095596Whole white alabastrum(diploid) 365.685
CNS0095597Whole white alabastrum(diploid) 474.221
CNS0095598Silvery flower (diploied) 138.647
CNS0095599Silvery flower (diploied) 242.272
CNS0095600Silvery flower (diploied) 321.465
CNS0095601Golden flower (diploid) 151.029
CNS0095602Golden flower (diploid) 236.334
CNS0095603Golden flower (diploid) 334.114
CNS0095604Slightly white alabastrum(tetraploid) 163.172
CNS0095605Slightly white alabastrum(tetraploid) 262.309
CNS0095606Slightly white alabastrum(tetraploid) 344.709
CNS0095607Whole white alabastrum(tetraploid) 198.155
CNS0095608Whole white alabastrum(tetraploid) 277.718
CNS0095609Whole white alabastrum(tetraploid) 342.091
CNS0095610Silvery flower (tetraploid) 112.475
CNS0095611Silvery flower (tetraploid) 222.718
CNS0095612Silvery flower (tetraploid) 320.170
CNS0095613Golden flower (tetraploid) 115.369
CNS0095614Golden flower (tetraploid) 217.031
CNS0095615Golden flower (tetraploid) 319.276
CRA001975CRR073297Stem 136.343
CRR073298Stem 232.718
CRR073299Stem 335.151
CRR073300Leaf 144.234
CRR073301Leaf 240.625
CRR073302Leaf 328.390
CRR073303Juvenile bud 133.958
CRR073304Juvenile bud 221.690
CRR073305Juvenile bud 325.085
CRR073306Third green 112.380
CRR073307Third green 212.004
CRR073308Third green 313.653
CRR073309Second white 18.180
CRR073310Second white 25.347
CRR073311Second white 38.758
CRR073312Silver flowering 110.610
CRR073313Silver flowering 29.214
CRR073314Silver flowering 311.076
CRR073315Gold flowering 118.337
CRR073316Gold flowering 216.019
CRR073317Gold flowering 310.038
CRR073318Tawny withering 136.744
CRR073319Tawny withering 247.809
CRR073320Tawny withering 329.324