Gene detail

Detail information of GWHGAAZE009853

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011082496.1	PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum]
Swissprot	tr\|Q570C0\|TIR1_ARATH	Protein TRANSPORT INHIBITOR RESPONSE 1
trEMBL	tr\|A0A022S5Q2\|A0A022S5Q2_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU46730.1}
TAIR10	AT3G62980.1	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	118587705	118591181	+
GWHAAZE00000002	mRNA	118587705	118591181	+
GWHAAZE00000002	exon	118587705	118588159	+
GWHAAZE00000002	exon	118589487	118589979	+
GWHAAZE00000002	exon	118590381	118591181	+
GWHAAZE00000002	CDS	118587705	118588159	+
GWHAAZE00000002	CDS	118589487	118589979	+
GWHAAZE00000002	CDS	118590381	118591181	+

Transcript Sequence
>GWHTAAZE009865 ATGGCGTACACGTTTCCGGAGGAAGTTTTAGAGTACGTATTGTCCTTCATATACTCCGATAAGGACCGAAACTCTGTATCAATGGTGTGCAAATCGTGGTACGAGATCGAGAGGTGGTGCAGGAGGCGGATCTTCGTCGGCAACTGCTACGCTGTGAGCCCTAGGATCATGATCCGACGGTTCCCGGAGGTCAGATCTGTGGAGCTTAAAGGTAAGCCTCATTTTGCTGATTTCAATCTGGTGCCGGACGGTTGGGGAGGTTATGTTTATCCTTGGATCGCGGCCATGGCTAGGGCTTACCCGTGGTTGGAGGAGATTAGGCTCAAGCGAATGGTTATTACTGACGAGACTTTGGAGCTCATCTCTCGCTCCTTTAAAAATTTCAAGGTTTTAGTGTTGTCTTCTTGTGAGGGCTTCACTACTGATGGACTTGCCGCCATTGCCGCTAATTGCAGGTACATGAGAGAACTAGATTTGGGGGAGAGTGAAGTTGAAGACCTGAGTGGACATTGGCTTAGCCATTTCCCCGATACCTGCACATCACTGGTGTCTCTTAACATCTCTTGCTTGGGCTCAGAGGTGAGCTTCTCAGCCCTTGAGCGCCTGGTTTCTCGGAGTCCCAATCTGAGGTCTCTTCGGCTAAACCGTGCTGTACCACTTGAGAGGCTCCCAAGCCTGCTTCTCCGGGCCCCACAGTTGGTGGAGTTAGGTACAGGTGCTTACTCTGCAGAGCTCCGGCCTGATGTATTCTCAAATCTAGCAGACTCCTTCTCAGGATGCAAACAACTAAAGGGCTTGTCTGGGTTTTGGGATGTGATTCCGGCTTACCTTCCAGCTATTTATTCAATCTGCTCTGGGATCACATCTTTGAACTTGAGTTATGCTGCCACCCAAAGCCCAGACCTTGGAAAGCTGGTTAGCCAGTGTCCAAAATTGCAGCGCCTATGGGTACTGGATTACATTGAAGACAGTGGCCTTAATGCGCTTGCTGCATCTTGCAAGGACTTACAAGAACTGAGGGTTTTTCCTTCTGACCCGTTCGGTGTTGAACCGAATGTTTCCATGACAGAACAAGGCCTTGTCTCTGTTTCCGAGGGCTGCCCCAAGCTCCAGTCGGTCCTATACTTCTGCCGTCGGATGTCAAATGCTGCATTAGTTGCCATTGCTAGGAACCGCCCTAACCTGATCCGCTTCCGTTTATGCATTATTGAGCCTCGTGCTCCAGACTACCTAACCCTTGAATCCCTTGACACTGGTTTCGGAGCTATAGTAGAGCAGTGCCAGGACCTAAGGCGTCTTTCTCTATCTGGCCTCCTCACTGATCGCGTGTTTGAGTACATAGGGACCCATGCTAAGAAGTTAGAGATGCTTTCTATAGCTTTTGCTGGGGATACTGATTTGGGCCTTCATCACGTGTTGTCTGGGTGTGAAAGCCTCCGCAAGCTGGAGATCAGGGACTCCCCTTTTGGGGACAAGGCTCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCTTCTTGTTTGGTTAGTTTTGGAGCATGTAAACTGCTAGGTCAAAAATTGCCTAGGCTCAATGTTGAAGTTATTGATGAGAGGGGACCCCCTGACTTGAGGCCAGAAAGCTTTCCCGTCGAGAAGCTTTACATATATAGGTCAGTTGCGGGGCCGAGATTTGACATGCCTGATTTTGTATGGACGATGGATGAAGAAGATGCAGCAGCGAGGCTTGCTTGA

Network for GWHGAAZE009853

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18511.2	F-box_5	3	43	1.40E-19
PF18791.2	Transp_inhibit	62	108	5.20E-27

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K14485	TIR1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.173
	SRR3591706	second leaf	117.363
	SRR3591707	mature leaf	132.475
	SRR3591708	Shoot apex	99.372
	SRR3591709	Stem	34.826
	SRR3591710	White floral bud	32.192
	SRR3591711	White flower	45.900
	SRR3591712	Green floral bud	32.167
	SRR3591713	Yellow flower	84.330
SRP173429	SRR8316895	Juvenile bud stage	15.225
	SRR8316896	Juvenile bud stage	20.226
	SRR8316897	Juvenile bud stage	7.327
	SRR8316894	Third green stage	13.571
	SRR8316900	Third green stage	27.354
	SRR8316901	Third green stage	23.072
	SRR8316898	Complete white stage	13.244
	SRR8316899	Complete white stage	34.666
	SRR8316903	Complete white stage	15.809
	SRR8316902	Silver flowering stage	6.699
	SRR8316904	Silver flowering stage	10.448
	SRR8316905	Silver flowering stage	5.834
	SRR8316906	Gold flowering stage	26.360
	SRR8316907	Gold flowering stage	31.526
	SRR8316908	Gold flowering stage	26.590
SRP132670	SRR6706286	Control	32.920
	SRR6706287	Light intensity 50%	34.111
	SRR6706288	Light intensity 20%	34.576
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.486
	CNS0095593	Slightly white alabastrum(diploid) 2	18.544
	CNS0095594	Slightly white alabastrum(diploid) 3	15.715
	CNS0095595	Whole white alabastrum(diploid) 2	15.958
	CNS0095596	Whole white alabastrum(diploid) 3	17.258
	CNS0095597	Whole white alabastrum(diploid) 4	10.488
	CNS0095598	Silvery flower (diploied) 1	33.941
	CNS0095599	Silvery flower (diploied) 2	17.128
	CNS0095600	Silvery flower (diploied) 3	24.837
	CNS0095601	Golden flower (diploid) 1	29.362
	CNS0095602	Golden flower (diploid) 2	41.878
	CNS0095603	Golden flower (diploid) 3	40.898
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.280
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.012
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.432
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.901
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.585
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.377
	CNS0095610	Silvery flower (tetraploid) 1	36.576
	CNS0095611	Silvery flower (tetraploid) 2	28.098
	CNS0095612	Silvery flower (tetraploid) 3	15.089
	CNS0095613	Golden flower (tetraploid) 1	16.774
	CNS0095614	Golden flower (tetraploid) 2	35.528
	CNS0095615	Golden flower (tetraploid) 3	46.038
CRA001975	CRR073297	Stem 1	65.433
	CRR073298	Stem 2	59.463
	CRR073299	Stem 3	67.802
	CRR073300	Leaf 1	45.887
	CRR073301	Leaf 2	48.203
	CRR073302	Leaf 3	53.018
	CRR073303	Juvenile bud 1	25.792
	CRR073304	Juvenile bud 2	24.258
	CRR073305	Juvenile bud 3	36.261
	CRR073306	Third green 1	19.611
	CRR073307	Third green 2	14.004
	CRR073308	Third green 3	16.100
	CRR073309	Second white 1	8.728
	CRR073310	Second white 2	7.121
	CRR073311	Second white 3	6.871
	CRR073312	Silver flowering 1	3.650
	CRR073313	Silver flowering 2	4.450
	CRR073314	Silver flowering 3	5.032
	CRR073315	Gold flowering 1	45.282
	CRR073316	Gold flowering 2	53.214
	CRR073317	Gold flowering 3	65.403
	CRR073318	Tawny withering 1	44.620
	CRR073319	Tawny withering 2	22.527
	CRR073320	Tawny withering 3	32.548