Gene detail

Detail information of GWHGAAZE009844

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007010252.1	9.56222E-64	C2H2 and C2HC zinc fingers superfamily protein isoform 1 [Theobroma cacao]
Swissprot	tr\|F6HQ26\|RU1C_VITVI	1E-59	U1 small nuclear ribonucleoprotein C {ECO:0000255\|HAMAP-Rule:MF_03153}
trEMBL	tr\|A0A061FQX2\|A0A061FQX2_THECC	4E-64	U1 small nuclear ribonucleoprotein C {ECO:0000256\|HAMAP-Rule:MF_03153}
TAIR10	AT4G03120.1	2E-12	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	118453844	118455087	+
GWHAAZE00000002	mRNA	118453844	118455087	+
GWHAAZE00000002	exon	118453844	118453888	+
GWHAAZE00000002	exon	118454041	118454166	+
GWHAAZE00000002	exon	118454197	118454302	+
GWHAAZE00000002	exon	118454825	118455087	+
GWHAAZE00000002	CDS	118453844	118453888	+
GWHAAZE00000002	CDS	118454041	118454166	+
GWHAAZE00000002	CDS	118454197	118454302	+
GWHAAZE00000002	CDS	118454825	118455087	+

Transcript Sequence
>GWHTAAZE009856 CAGCCTTCTGTGAGAAAGCAGCACAATGCGGGTTACAAACACAAGGCAAACGTGCGCATATATTACCAGCAATATGAGGCACAGCAAAACCAATATTTGATTGACCAAAAGGTTAAAGAACATCTTGGGCAGGCTGCAGCATACCAGCAAGTTGGTGCTGCCTACAATCAGCCTATGATGCCAATGCCAGGGAACCCACAGATGCAAATGAATTCACCTTTAATCCCAGGAATGAGGCCTCCAGTTTTGCCAAGACCAACAATCCCTGGTACCTCAGGTTATGCCTCTGCCCCAGGCATGCCTCCAATGATGGCGCCACCTGGTGCTCAGTCCTTGCCCGGTCAAATTAATGGTCTCTCAAGGCCTATGACAATGAGTGCACCCATGATGGTTCCCGGGAGCTTGGGAATGCCTACTTCTAGTGGTGCCCCACCACCAATGTTTACACCTGGTGCGTATCAAGCAAATCCAGCTGCACCAACAACTGCAGGTTTTGATAGTTCGAATGTGAATGCCCAGGCTTCTGAGGCTAATCATTAG

Network for GWHGAAZE009844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06220.13	zf-U1	2	22	6.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11095	SNRPC	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000387	biological_process	spliceosomal snRNP assembly
GO:0000398	biological_process	mRNA splicing, via spliceosome
GO:0005685	cellular_component	U1 snRNP
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.369
	SRR3591706	second leaf	49.531
	SRR3591707	mature leaf	48.080
	SRR3591708	Shoot apex	88.127
	SRR3591709	Stem	62.685
	SRR3591710	White floral bud	79.199
	SRR3591711	White flower	96.681
	SRR3591712	Green floral bud	98.486
	SRR3591713	Yellow flower	94.986
SRP173429	SRR8316895	Juvenile bud stage	44.143
	SRR8316896	Juvenile bud stage	63.325
	SRR8316897	Juvenile bud stage	36.333
	SRR8316894	Third green stage	25.605
	SRR8316900	Third green stage	71.887
	SRR8316901	Third green stage	74.045
	SRR8316898	Complete white stage	26.077
	SRR8316899	Complete white stage	79.425
	SRR8316903	Complete white stage	40.535
	SRR8316902	Silver flowering stage	27.320
	SRR8316904	Silver flowering stage	38.373
	SRR8316905	Silver flowering stage	18.445
	SRR8316906	Gold flowering stage	63.611
	SRR8316907	Gold flowering stage	65.423
	SRR8316908	Gold flowering stage	67.869
SRP132670	SRR6706286	Control	66.202
	SRR6706287	Light intensity 50%	67.529
	SRR6706288	Light intensity 20%	73.085
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	78.575
	CNS0095593	Slightly white alabastrum(diploid) 2	80.545
	CNS0095594	Slightly white alabastrum(diploid) 3	72.008
	CNS0095595	Whole white alabastrum(diploid) 2	72.777
	CNS0095596	Whole white alabastrum(diploid) 3	68.770
	CNS0095597	Whole white alabastrum(diploid) 4	70.214
	CNS0095598	Silvery flower (diploied) 1	57.684
	CNS0095599	Silvery flower (diploied) 2	52.658
	CNS0095600	Silvery flower (diploied) 3	65.827
	CNS0095601	Golden flower (diploid) 1	59.101
	CNS0095602	Golden flower (diploid) 2	69.302
	CNS0095603	Golden flower (diploid) 3	67.461
	CNS0095604	Slightly white alabastrum(tetraploid) 1	68.694
	CNS0095605	Slightly white alabastrum(tetraploid) 2	74.413
	CNS0095606	Slightly white alabastrum(tetraploid) 3	78.632
	CNS0095607	Whole white alabastrum(tetraploid) 1	66.103
	CNS0095608	Whole white alabastrum(tetraploid) 2	63.912
	CNS0095609	Whole white alabastrum(tetraploid) 3	63.138
	CNS0095610	Silvery flower (tetraploid) 1	62.474
	CNS0095611	Silvery flower (tetraploid) 2	73.968
	CNS0095612	Silvery flower (tetraploid) 3	76.320
	CNS0095613	Golden flower (tetraploid) 1	66.409
	CNS0095614	Golden flower (tetraploid) 2	68.520
	CNS0095615	Golden flower (tetraploid) 3	77.376
CRA001975	CRR073297	Stem 1	63.421
	CRR073298	Stem 2	59.256
	CRR073299	Stem 3	69.939
	CRR073300	Leaf 1	58.247
	CRR073301	Leaf 2	66.307
	CRR073302	Leaf 3	75.190
	CRR073303	Juvenile bud 1	61.754
	CRR073304	Juvenile bud 2	55.145
	CRR073305	Juvenile bud 3	68.774
	CRR073306	Third green 1	36.846
	CRR073307	Third green 2	35.447
	CRR073308	Third green 3	37.420
	CRR073309	Second white 1	39.747
	CRR073310	Second white 2	44.009
	CRR073311	Second white 3	41.569
	CRR073312	Silver flowering 1	46.965
	CRR073313	Silver flowering 2	40.911
	CRR073314	Silver flowering 3	42.624
	CRR073315	Gold flowering 1	51.554
	CRR073316	Gold flowering 2	54.855
	CRR073317	Gold flowering 3	42.665
	CRR073318	Tawny withering 1	65.205
	CRR073319	Tawny withering 2	72.111
	CRR073320	Tawny withering 3	76.739