Gene detail

Detail information of GWHGAAZE009806

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03607.1	6.74369E-71	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9ZUG9\|BH066_ARATH	7E-20	Transcription factor bHLH66
trEMBL	tr\|A0A068U5N6\|A0A068U5N6_COFCA	3E-71	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03607.1}
TAIR10	AT5G64980.1	4E-24	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	117588284	117594009	+
GWHAAZE00000002	mRNA	117588284	117594009	+
GWHAAZE00000002	exon	117588284	117588359	+
GWHAAZE00000002	exon	117589478	117589791	+
GWHAAZE00000002	exon	117590063	117590140	+
GWHAAZE00000002	exon	117590269	117590397	+
GWHAAZE00000002	exon	117590606	117590671	+
GWHAAZE00000002	exon	117591578	117591643	+
GWHAAZE00000002	exon	117592335	117592394	+
GWHAAZE00000002	exon	117592467	117592907	+
GWHAAZE00000002	exon	117593100	117593557	+
GWHAAZE00000002	exon	117593987	117594009	+
GWHAAZE00000002	five_prime_UTR	117588284	117588359	+
GWHAAZE00000002	five_prime_UTR	117589478	117589494	+
GWHAAZE00000002	CDS	117589495	117589791	+
GWHAAZE00000002	CDS	117590063	117590140	+
GWHAAZE00000002	CDS	117590269	117590397	+
GWHAAZE00000002	CDS	117590606	117590671	+
GWHAAZE00000002	CDS	117591578	117591643	+
GWHAAZE00000002	CDS	117592335	117592394	+
GWHAAZE00000002	CDS	117592467	117592628	+
GWHAAZE00000002	three_prime_UTR	117592629	117592907	+
GWHAAZE00000002	three_prime_UTR	117593100	117593557	+
GWHAAZE00000002	three_prime_UTR	117593987	117594009	+

Transcript Sequence
>GWHTAAZE009818 ATCTCATCCTCCAAATTCTTTGTTTCTCTTCTCATTTCTATCTTTCGCTCTCTGTAACAAACCCTAATCTGCTAAGTTTTTTCCCTAGGTAATATGGAAGGACAAAGTCATCGGAACTCTTTGACATCATTGGATGCATATAATTTGTCTCAGTTAGCCATCAACTATCCATACCAGTACCATACTGTAACAGGTGGAAGGAATGAAAGTCTTTATGTTCCTCCGACCTTCCCTCAGTGGAATCAGTGCCAGCCAATGTCTCACAATTATGTCAAGTTTCTTGCTGAAAATGGGGCCTCTGAAATCCAGTTGGAAACATCTTACAACAATTCTTGCGTGACATCTAGTTTTAAACCAGTCGATTCTTACCCTGACATTGATGATCAGAAGCTGAGATATTTGAGAACGTATAATGAAGGAGCACCTGTTTACAAACTCTCAAATGCAGAACAACAAATCTCTGTTCAGGCAGAAGAGTCAAGTGAAGGTCATTGTAGTGGTACTCAACTTTATCCAAGACTAGCAATTGGTACATCAGGTTTTCCACCCAAAGCATGTAGCAGGGTATCAAGACAGAGGTCAACTGCTGCTGATCGTCATCGCAGATTAAGGATTACCAAGAGACTGGATGCGCTGCAGGAACTGCTTCCATCTACTAAACAGGGTGGTAAAGCGTCTCGACTGAATGACATCATTGAACATGTCAAGTACTTGCAGCTTCAAGTAAAGGATCTTAGTAGAAGCAGATTGGGAGGTGAATCAACTTCTCATCCTTTCGTGTTCCTTGAGGGATACGGACACTACCTTTTCCGCGAAGAGATGCAGAAAGAACCTCTGGAAGAGATGATGGGGAAGTTGATGGAGGTGAATCCAACAGCAGCAGCCCAGCTGTTGGGGAGTAGGGGCCTTTTTGTGATGCCTATGGCTCTTGCTGAAGGATTACAACTATAGCCACATAGATGCGCCGCATGCTGGTCCATTATTCTCTGACATCTAACCATTTCCAACCATTGGGCTTCATTTCTGGGATAGCTTTGCGGTCAAAGCCTTTTTTGTCAATTTCTTGTTAGAGAGACATCTCTGTTATTTTAATCTTTTGACATGGTAGATACCATCTTTAATTGTTATTTCTCACGTTCCTTTGCTTTTTTATTTTTGGCAAAATTTCCTTTGTTACTCAATCAGCTGGTAGAACGAAAGCCTTTTGTACTTTCTAGGAATTCTAAATCGACATGGCCAAGATTTCAACATTTTGATCACCTTGGTGGAATCAATTCCTAATGATGCACCTACATTGCTTCACTATAAAGGGAAGACAAGTGTTAAAAAGATTTTCTAATTTTGACCAATTTGCTGCCTCAATTTTCTATTTTTGTACAAAATTTCTATTCTTGCTAAAACTGCAACTAACTTGGTTTAGTTTGATCGTGCTAAACCAGTACATCTTCCTGCAAATATTAGTAAGTGCAAACCTTTCTTCTTGAACAGAGCAGAGTAACCATGACTGTGGACAAGAGCAGCAGCAGCACGTTGAAATAGTGGCAGTAACACGGAAGCTGTGAGGTTCCCCAAGAGAGATGGAGCTGAAATCTGACTAGAATTTACAACTAATGTACACCAAAATTCTTCCCAATATTTTGCAACTCATTCTGCGAGTTTTCTCATGTCAGACCAATATCCCTGCACATAAAAATTGGGAGCAATGCGTGCA

Network for GWHGAAZE009806

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	160	208	1.80E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.345
	SRR3591706	second leaf	1.290
	SRR3591707	mature leaf	0.831
	SRR3591708	Shoot apex	18.829
	SRR3591709	Stem	3.199
	SRR3591710	White floral bud	4.144
	SRR3591711	White flower	0.987
	SRR3591712	Green floral bud	2.899
	SRR3591713	Yellow flower	0.389
SRP173429	SRR8316895	Juvenile bud stage	7.941
	SRR8316896	Juvenile bud stage	7.332
	SRR8316897	Juvenile bud stage	5.245
	SRR8316894	Third green stage	3.053
	SRR8316900	Third green stage	6.038
	SRR8316901	Third green stage	5.016
	SRR8316898	Complete white stage	1.246
	SRR8316899	Complete white stage	6.949
	SRR8316903	Complete white stage	2.232
	SRR8316902	Silver flowering stage	1.152
	SRR8316904	Silver flowering stage	1.169
	SRR8316905	Silver flowering stage	0.404
	SRR8316906	Gold flowering stage	1.296
	SRR8316907	Gold flowering stage	1.282
	SRR8316908	Gold flowering stage	1.073
SRP132670	SRR6706286	Control	3.035
	SRR6706287	Light intensity 50%	3.176
	SRR6706288	Light intensity 20%	3.272
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.234
	CNS0095593	Slightly white alabastrum(diploid) 2	6.949
	CNS0095594	Slightly white alabastrum(diploid) 3	7.245
	CNS0095595	Whole white alabastrum(diploid) 2	7.068
	CNS0095596	Whole white alabastrum(diploid) 3	5.094
	CNS0095597	Whole white alabastrum(diploid) 4	6.364
	CNS0095598	Silvery flower (diploied) 1	6.381
	CNS0095599	Silvery flower (diploied) 2	7.879
	CNS0095600	Silvery flower (diploied) 3	1.961
	CNS0095601	Golden flower (diploid) 1	7.264
	CNS0095602	Golden flower (diploid) 2	2.194
	CNS0095603	Golden flower (diploid) 3	2.517
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.694
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.470
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.190
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.743
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.376
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.841
	CNS0095610	Silvery flower (tetraploid) 1	6.422
	CNS0095611	Silvery flower (tetraploid) 2	3.014
	CNS0095612	Silvery flower (tetraploid) 3	3.023
	CNS0095613	Golden flower (tetraploid) 1	0.819
	CNS0095614	Golden flower (tetraploid) 2	4.375
	CNS0095615	Golden flower (tetraploid) 3	0.781
CRA001975	CRR073297	Stem 1	5.662
	CRR073298	Stem 2	5.210
	CRR073299	Stem 3	4.185
	CRR073300	Leaf 1	5.312
	CRR073301	Leaf 2	4.514
	CRR073302	Leaf 3	2.473
	CRR073303	Juvenile bud 1	2.622
	CRR073304	Juvenile bud 2	0.920
	CRR073305	Juvenile bud 3	4.114
	CRR073306	Third green 1	0.308
	CRR073307	Third green 2	1.092
	CRR073308	Third green 3	0.732
	CRR073309	Second white 1	0.067
	CRR073310	Second white 2	0.079
	CRR073311	Second white 3	0.144
	CRR073312	Silver flowering 1	0.313
	CRR073313	Silver flowering 2	0.031
	CRR073314	Silver flowering 3	0.346
	CRR073315	Gold flowering 1	2.838
	CRR073316	Gold flowering 2	2.898
	CRR073317	Gold flowering 3	1.887
	CRR073318	Tawny withering 1	3.909
	CRR073319	Tawny withering 2	3.531
	CRR073320	Tawny withering 3	5.087