Detail information of GWHGAAZE009797


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010684257.11.07594E-54PREDICTED: basic helix-loop-helix protein A [Beta vulgaris subsp. vulgaris]
Swissprottr|E3SXU4|BHLHW_PEA2E-51Basic helix-loop-helix protein A
trEMBLtr|Q9FEA1|Q9FEA1_PETHY7E-55Anthocyanin 1 {ECO:0000313|EMBL:AAG25928.1}
TAIR10AT4G09820.13E-35basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene117452685117453272-
GWHAAZE00000002mRNA117452685117453272-
GWHAAZE00000002exon117453039117453272-
GWHAAZE00000002exon117452685117452927-
GWHAAZE00000002CDS117453039117453272-
GWHAAZE00000002CDS117452685117452927-
Transcript Sequence

Network for GWHGAAZE009797

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH3454.40E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.032
SRR3591706second leaf0.434
SRR3591707mature leaf0.811
SRR3591708Shoot apex1.130
SRR3591709Stem5.042
SRR3591710White floral bud3.827
SRR3591711White flower1.167
SRR3591712Green floral bud5.449
SRR3591713Yellow flower0.392
SRP173429 SRR8316895Juvenile bud stage 3.533
SRR8316896Juvenile bud stage 6.466
SRR8316897Juvenile bud stage 1.815
SRR8316894Third green stage 1.557
SRR8316900Third green stage 6.516
SRR8316901Third green stage 4.323
SRR8316898Complete white stage 0.550
SRR8316899Complete white stage 3.093
SRR8316903Complete white stage 3.059
SRR8316902Silver flowering stage0.578
SRR8316904Silver flowering stage0.409
SRR8316905Silver flowering stage0.130
SRR8316906Gold flowering stage 0.446
SRR8316907Gold flowering stage 2.085
SRR8316908Gold flowering stage 0.825
SRP132670SRR6706286Control4.156
SRR6706287Light intensity 50%4.378
SRR6706288Light intensity 20%5.078
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.898
CNS0095593Slightly white alabastrum(diploid) 26.047
CNS0095594Slightly white alabastrum(diploid) 39.590
CNS0095595Whole white alabastrum(diploid) 27.623
CNS0095596Whole white alabastrum(diploid) 36.557
CNS0095597Whole white alabastrum(diploid) 47.589
CNS0095598Silvery flower (diploied) 12.289
CNS0095599Silvery flower (diploied) 25.370
CNS0095600Silvery flower (diploied) 31.927
CNS0095601Golden flower (diploid) 15.858
CNS0095602Golden flower (diploid) 22.004
CNS0095603Golden flower (diploid) 32.457
CNS0095604Slightly white alabastrum(tetraploid) 14.437
CNS0095605Slightly white alabastrum(tetraploid) 24.952
CNS0095606Slightly white alabastrum(tetraploid) 35.064
CNS0095607Whole white alabastrum(tetraploid) 16.835
CNS0095608Whole white alabastrum(tetraploid) 28.043
CNS0095609Whole white alabastrum(tetraploid) 32.490
CNS0095610Silvery flower (tetraploid) 10.960
CNS0095611Silvery flower (tetraploid) 20.831
CNS0095612Silvery flower (tetraploid) 30.897
CNS0095613Golden flower (tetraploid) 10.326
CNS0095614Golden flower (tetraploid) 20.463
CNS0095615Golden flower (tetraploid) 30.212
CRA001975CRR073297Stem 18.976
CRR073298Stem 25.487
CRR073299Stem 33.633
CRR073300Leaf 16.172
CRR073301Leaf 25.176
CRR073302Leaf 32.815
CRR073303Juvenile bud 13.418
CRR073304Juvenile bud 21.201
CRR073305Juvenile bud 33.702
CRR073306Third green 10.389
CRR073307Third green 21.017
CRR073308Third green 30.925
CRR073309Second white 11.399
CRR073310Second white 20.000
CRR073311Second white 30.388
CRR073312Silver flowering 10.011
CRR073313Silver flowering 20.145
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.136
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.247
CRR073319Tawny withering 23.379
CRR073320Tawny withering 30.533