Detail information of GWHGAAZE009777


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011079871.11.2461E-106PREDICTED: 40S ribosomal protein S18-like [Sesamum indicum]
Swissprottr|P34788|RS18_ARATH3E-10340S ribosomal protein S18
trEMBLtr|A0A022RPP2|A0A022RPP2_ERYGU1E-106Uncharacterized protein {ECO:0000313|EMBL:EYU40915.1}
TAIR10AT1G34030.14E-72Ribosomal protein S13/S18 family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene116933477116935679-
GWHAAZE00000002mRNA116933477116935679-
GWHAAZE00000002exon116933477116933582-
GWHAAZE00000002exon116933748116933936-
GWHAAZE00000002exon116935390116935550-
GWHAAZE00000002exon116935677116935679-
GWHAAZE00000002CDS116935677116935679-
GWHAAZE00000002CDS116935390116935550-
GWHAAZE00000002CDS116933748116933936-
GWHAAZE00000002CDS116933477116933582-
Transcript Sequence

Network for GWHGAAZE009777

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00416.23Ribosomal_S13141421.80E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02964RP-S18e, RPS18 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf543.572
SRR3591706second leaf221.986
SRR3591707mature leaf104.324
SRR3591708Shoot apex594.327
SRR3591709Stem247.236
SRR3591710White floral bud217.800
SRR3591711White flower281.669
SRR3591712Green floral bud533.865
SRR3591713Yellow flower188.585
SRP173429 SRR8316895Juvenile bud stage 275.902
SRR8316896Juvenile bud stage 376.787
SRR8316897Juvenile bud stage 209.867
SRR8316894Third green stage 157.713
SRR8316900Third green stage 574.514
SRR8316901Third green stage 540.934
SRR8316898Complete white stage 86.650
SRR8316899Complete white stage 393.397
SRR8316903Complete white stage 116.416
SRR8316902Silver flowering stage75.740
SRR8316904Silver flowering stage78.215
SRR8316905Silver flowering stage38.449
SRR8316906Gold flowering stage 128.869
SRR8316907Gold flowering stage 132.519
SRR8316908Gold flowering stage 171.297
SRP132670SRR6706286Control397.706
SRR6706287Light intensity 50%408.429
SRR6706288Light intensity 20%460.309
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1498.867
CNS0095593Slightly white alabastrum(diploid) 2612.702
CNS0095594Slightly white alabastrum(diploid) 3491.815
CNS0095595Whole white alabastrum(diploid) 2494.003
CNS0095596Whole white alabastrum(diploid) 3579.251
CNS0095597Whole white alabastrum(diploid) 4354.430
CNS0095598Silvery flower (diploied) 1197.464
CNS0095599Silvery flower (diploied) 2205.774
CNS0095600Silvery flower (diploied) 3170.359
CNS0095601Golden flower (diploid) 1175.039
CNS0095602Golden flower (diploid) 2153.454
CNS0095603Golden flower (diploid) 3152.960
CNS0095604Slightly white alabastrum(tetraploid) 1464.880
CNS0095605Slightly white alabastrum(tetraploid) 2495.614
CNS0095606Slightly white alabastrum(tetraploid) 3518.801
CNS0095607Whole white alabastrum(tetraploid) 1265.549
CNS0095608Whole white alabastrum(tetraploid) 2251.810
CNS0095609Whole white alabastrum(tetraploid) 3469.894
CNS0095610Silvery flower (tetraploid) 1174.006
CNS0095611Silvery flower (tetraploid) 2149.683
CNS0095612Silvery flower (tetraploid) 3100.358
CNS0095613Golden flower (tetraploid) 1100.279
CNS0095614Golden flower (tetraploid) 2130.055
CNS0095615Golden flower (tetraploid) 372.850
CRA001975CRR073297Stem 1545.359
CRR073298Stem 2541.938
CRR073299Stem 3647.982
CRR073300Leaf 1579.234
CRR073301Leaf 2657.008
CRR073302Leaf 3816.460
CRR073303Juvenile bud 1733.293
CRR073304Juvenile bud 2576.707
CRR073305Juvenile bud 3540.727
CRR073306Third green 185.816
CRR073307Third green 285.476
CRR073308Third green 3104.327
CRR073309Second white 1133.006
CRR073310Second white 288.283
CRR073311Second white 371.067
CRR073312Silver flowering 189.925
CRR073313Silver flowering 2135.130
CRR073314Silver flowering 3115.037
CRR073315Gold flowering 1271.494
CRR073316Gold flowering 2283.167
CRR073317Gold flowering 3273.980
CRR073318Tawny withering 1561.682
CRR073319Tawny withering 2503.657
CRR073320Tawny withering 3545.830