Gene detail

Detail information of GWHGAAZE009764

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002524739.1	0	protein kinase atmrk1, putative [Ricinus communis]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	4E-69	Serine/threonine-protein kinase HT1
trEMBL	tr\|B9SFH0\|B9SFH0_RICCO	0	Protein kinase atmrk1, putative {ECO:0000313\|EMBL:EEF37582.1}
TAIR10	AT3G22750.1	2E-171	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116748553	116751329	+
GWHAAZE00000002	mRNA	116748553	116751329	+
GWHAAZE00000002	exon	116748553	116748883	+
GWHAAZE00000002	exon	116749719	116749840	+
GWHAAZE00000002	exon	116750259	116750458	+
GWHAAZE00000002	exon	116750560	116750734	+
GWHAAZE00000002	exon	116750881	116751015	+
GWHAAZE00000002	exon	116751123	116751329	+
GWHAAZE00000002	CDS	116748553	116748883	+
GWHAAZE00000002	CDS	116749719	116749840	+
GWHAAZE00000002	CDS	116750259	116750458	+
GWHAAZE00000002	CDS	116750560	116750734	+
GWHAAZE00000002	CDS	116750881	116751015	+
GWHAAZE00000002	CDS	116751123	116751329	+

Transcript Sequence
>GWHTAAZE009776 ATGGATTCGAAAAGTGGTGATGCCATTGAAGGGGACGTATCTAATGGGAGGGAGGGGGCTTTAGGGTTGAAAGGAAAGGATGTGGGGAGTATGATTAACAAAGATTTGTTTTTGAGGGCAGATAAGATAGATTTGAAGAGGTGGGATAATATGGAATTGGAGAAAAGATTGAGTAGGGTTTGGTCAAGGAATGGTTCAGGTGGGGATGATGTGAAGAAAAAGAAGGAAGAGTGGGAGATTGATTTGGCTAAATTGGATATTAGAAATGCTATTGCTCGCGGTACTTATGGTACTGTTTATAGGGGTACTTATGATGGTCAAGATGTTGCTGTGAAGGTTCTGGATTGGGGGGAGGATGGCATTGCCACAGTAGCTGAGACTGCCGCTCTTCGATCGTCATTTCGGCAAGAGGTTGCTGTTTGGCATAAGCTTGACCATCTAAATGTCACAAAGTTTATTGGAGCTTCAATGGGAACATCGAATCTTAAGGTCCCCTCCAACAATGACGATCGTAATTCCCTTCCTTCCAGAGCATGTTGTGTTGTGGTCGAGTACCTTACTGGTGGGACGCTAAAGAAATACTTAATCAGGAATTCTAGAAAGAAACTTGCCTTCAAGATTGTTATTCAACTTGCTTTGGACCTCTCTAGAGGTATGAGCTATCTTCATTCTAAAAAGATTGTACATCGTGATGTTAAAACGGAAAATATGTTGCTAGATATTAACAGAACTCTTAAAATTGCTGATTTTGGTGTCGCACGAGTCGAAGCTCAAAATCCTAGGGACATGACTGGGGAAACTGGCACCCTTGGTTACATGGCTCCAGAGGTCCTCGACGGCAAGCCTTACAACAGGAAATGTGACGTCTACAGTTTCGGCATATGCTTGTGGGAAATCTATTGCTGTGACATGCCTTATCTGAATCTTAGCTTCGCTGAAGTATCTTCTCAAGTTGTTCGACAGAATTTACGACCAGAAATTCCTAGATGTTGTCCAAGTTCATTAGCAAGCATCATGAGGAAGTGTTGGGATGCGAACCCTGAAAGACGGCCGGAGATGGATGAAGTTGTGAGCTTGTTAGAAGCGATAGATACAAGCAAAGGTGGTGGAATGATGCCTGAAGACCAAGTTAATGGTTGCTTCTGTTTTAGCGTGGGTCATGGTCCTTGA

Network for GWHGAAZE009764

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	86	360	7.10E-61

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.855
	SRR3591706	second leaf	1.190
	SRR3591707	mature leaf	1.046
	SRR3591708	Shoot apex	1.304
	SRR3591709	Stem	4.704
	SRR3591710	White floral bud	1.625
	SRR3591711	White flower	1.095
	SRR3591712	Green floral bud	0.412
	SRR3591713	Yellow flower	0.406
SRP173429	SRR8316895	Juvenile bud stage	0.403
	SRR8316896	Juvenile bud stage	0.266
	SRR8316897	Juvenile bud stage	0.092
	SRR8316894	Third green stage	0.155
	SRR8316900	Third green stage	0.400
	SRR8316901	Third green stage	0.058
	SRR8316898	Complete white stage	0.072
	SRR8316899	Complete white stage	0.551
	SRR8316903	Complete white stage	0.404
	SRR8316902	Silver flowering stage	0.206
	SRR8316904	Silver flowering stage	0.456
	SRR8316905	Silver flowering stage	0.220
	SRR8316906	Gold flowering stage	0.317
	SRR8316907	Gold flowering stage	0.006
	SRR8316908	Gold flowering stage	0.408
SRP132670	SRR6706286	Control	0.277
	SRR6706287	Light intensity 50%	0.329
	SRR6706288	Light intensity 20%	0.638
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.222
	CNS0095593	Slightly white alabastrum(diploid) 2	0.195
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.061
	CNS0095596	Whole white alabastrum(diploid) 3	0.579
	CNS0095597	Whole white alabastrum(diploid) 4	0.152
	CNS0095598	Silvery flower (diploied) 1	0.237
	CNS0095599	Silvery flower (diploied) 2	0.415
	CNS0095600	Silvery flower (diploied) 3	0.149
	CNS0095601	Golden flower (diploid) 1	0.268
	CNS0095602	Golden flower (diploid) 2	0.266
	CNS0095603	Golden flower (diploid) 3	0.274
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.937
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.481
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.647
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.305
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.699
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.643
	CNS0095610	Silvery flower (tetraploid) 1	0.852
	CNS0095611	Silvery flower (tetraploid) 2	0.788
	CNS0095612	Silvery flower (tetraploid) 3	0.829
	CNS0095613	Golden flower (tetraploid) 1	0.635
	CNS0095614	Golden flower (tetraploid) 2	0.465
	CNS0095615	Golden flower (tetraploid) 3	0.535
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.233
	CRR073299	Stem 3	0.362
	CRR073300	Leaf 1	0.344
	CRR073301	Leaf 2	0.632
	CRR073302	Leaf 3	0.281
	CRR073303	Juvenile bud 1	0.200
	CRR073304	Juvenile bud 2	0.172
	CRR073305	Juvenile bud 3	0.712
	CRR073306	Third green 1	0.326
	CRR073307	Third green 2	0.191
	CRR073308	Third green 3	0.551
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.059
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.059
	CRR073315	Gold flowering 1	0.145
	CRR073316	Gold flowering 2	0.186
	CRR073317	Gold flowering 3	0.216
	CRR073318	Tawny withering 1	4.579
	CRR073319	Tawny withering 2	5.565
	CRR073320	Tawny withering 3	2.818