Detail information of GWHGAAZE009761


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003632328.10PREDICTED: serine/threonine-protein kinase Nek2 [Vitis vinifera]
Swissprottr|Q2QMH1|NEK2_ORYSJ0Serine/threonine-protein kinase Nek2
trEMBLtr|F6HI67|F6HI67_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB51913.1}
TAIR10AT3G63280.20NIMA-related kinase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene116690758116695413-
GWHAAZE00000002mRNA116690758116695413-
GWHAAZE00000002exon116690758116691381-
GWHAAZE00000002exon116691524116691979-
GWHAAZE00000002exon116692758116692809-
GWHAAZE00000002exon116692924116692997-
GWHAAZE00000002exon116693306116693355-
GWHAAZE00000002exon116693443116693524-
GWHAAZE00000002exon116693614116693663-
GWHAAZE00000002exon116693761116693803-
GWHAAZE00000002exon116693909116693989-
GWHAAZE00000002exon116694102116694147-
GWHAAZE00000002exon116694259116694305-
GWHAAZE00000002exon116694815116694880-
GWHAAZE00000002exon116695122116695188-
GWHAAZE00000002exon116695328116695413-
GWHAAZE00000002CDS116695328116695413-
GWHAAZE00000002CDS116695122116695188-
GWHAAZE00000002CDS116694815116694880-
GWHAAZE00000002CDS116694259116694305-
GWHAAZE00000002CDS116694102116694147-
GWHAAZE00000002CDS116693909116693989-
GWHAAZE00000002CDS116693761116693803-
GWHAAZE00000002CDS116693614116693663-
GWHAAZE00000002CDS116693443116693524-
GWHAAZE00000002CDS116693306116693355-
GWHAAZE00000002CDS116692924116692997-
GWHAAZE00000002CDS116692758116692809-
GWHAAZE00000002CDS116691524116691979-
GWHAAZE00000002CDS116690758116691381-
Transcript Sequence

Network for GWHGAAZE009761

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase42578.80E-64
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyNEK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.690
SRR3591706second leaf1.589
SRR3591707mature leaf2.032
SRR3591708Shoot apex13.667
SRR3591709Stem51.080
SRR3591710White floral bud2.734
SRR3591711White flower10.873
SRR3591712Green floral bud1.790
SRR3591713Yellow flower10.858
SRP173429 SRR8316895Juvenile bud stage 14.784
SRR8316896Juvenile bud stage 16.068
SRR8316897Juvenile bud stage 5.078
SRR8316894Third green stage 5.069
SRR8316900Third green stage 8.025
SRR8316901Third green stage 6.508
SRR8316898Complete white stage 1.381
SRR8316899Complete white stage 6.638
SRR8316903Complete white stage 4.807
SRR8316902Silver flowering stage3.118
SRR8316904Silver flowering stage4.374
SRR8316905Silver flowering stage1.463
SRR8316906Gold flowering stage 6.714
SRR8316907Gold flowering stage 7.067
SRR8316908Gold flowering stage 8.662
SRP132670SRR6706286Control5.477
SRR6706287Light intensity 50%5.772
SRR6706288Light intensity 20%5.604
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.805
CNS0095593Slightly white alabastrum(diploid) 24.854
CNS0095594Slightly white alabastrum(diploid) 36.693
CNS0095595Whole white alabastrum(diploid) 24.633
CNS0095596Whole white alabastrum(diploid) 33.344
CNS0095597Whole white alabastrum(diploid) 43.685
CNS0095598Silvery flower (diploied) 19.169
CNS0095599Silvery flower (diploied) 25.950
CNS0095600Silvery flower (diploied) 311.220
CNS0095601Golden flower (diploid) 18.436
CNS0095602Golden flower (diploid) 212.083
CNS0095603Golden flower (diploid) 310.710
CNS0095604Slightly white alabastrum(tetraploid) 13.648
CNS0095605Slightly white alabastrum(tetraploid) 23.179
CNS0095606Slightly white alabastrum(tetraploid) 37.222
CNS0095607Whole white alabastrum(tetraploid) 13.636
CNS0095608Whole white alabastrum(tetraploid) 22.807
CNS0095609Whole white alabastrum(tetraploid) 33.899
CNS0095610Silvery flower (tetraploid) 19.507
CNS0095611Silvery flower (tetraploid) 29.047
CNS0095612Silvery flower (tetraploid) 35.633
CNS0095613Golden flower (tetraploid) 13.579
CNS0095614Golden flower (tetraploid) 26.742
CNS0095615Golden flower (tetraploid) 34.834
CRA001975CRR073297Stem 113.044
CRR073298Stem 211.284
CRR073299Stem 39.565
CRR073300Leaf 16.297
CRR073301Leaf 27.373
CRR073302Leaf 34.514
CRR073303Juvenile bud 13.565
CRR073304Juvenile bud 23.277
CRR073305Juvenile bud 35.748
CRR073306Third green 11.263
CRR073307Third green 20.987
CRR073308Third green 31.458
CRR073309Second white 13.244
CRR073310Second white 23.160
CRR073311Second white 32.604
CRR073312Silver flowering 14.670
CRR073313Silver flowering 27.963
CRR073314Silver flowering 36.095
CRR073315Gold flowering 10.923
CRR073316Gold flowering 21.474
CRR073317Gold flowering 32.298
CRR073318Tawny withering 120.866
CRR073319Tawny withering 214.077
CRR073320Tawny withering 323.930