Gene detail

Detail information of GWHGAAZE009749

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03674.1	2.1244E-127	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LUH8\|HFA6B_ARATH	1E-92	Heat stress transcription factor A-6b
trEMBL	tr\|A0A068U6A9\|A0A068U6A9_COFCA	8E-128	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03674.1}
TAIR10	AT3G22830.1	1E-67	heat shock transcription factor A6B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116516841	116518119	-
GWHAAZE00000002	mRNA	116516841	116518119	-
GWHAAZE00000002	exon	116517886	116518119	-
GWHAAZE00000002	exon	116516841	116517596	-
GWHAAZE00000002	CDS	116517886	116518119	-
GWHAAZE00000002	CDS	116516841	116517596	-

Transcript Sequence
>GWHTAAZE009761 ATGCGACCGCCGCTGCTGCAGCCAAGGGAGGGGCTTGATGAAATTGGACCTCCACCATTCCTCACTAAAATATTTGAGATTGTGGATGACCCAATCACTGATGCCATTGTTTCTTGGAACGGAGGTGGTCAAAGCTTGGTTGTGTGGGATCCCCATGCTTTCTCCTCCAATCTCCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTATCAGGCAACTTAATACTTACCTAATTCACCTACTTCCACTTTTGGGTTGTACGTCAAAACTTTGGTCTATTTACTTGCAGGGTTTCAAAAAGATCGATCCAGATATATGGGAATTTGCCAATGAATCATTTCTGAAGGGTCAGAAGCACCTTCTGAAGAATATTAAGAGGAAAAGGGCACCTTCCTCTCAACCACAAGAACCTCTTAGTAGTACTTGTGTTGAAATTGAAAGATTGGGACTAGATGGAGAACTTGAAAGATTGAGAGGCGATAAACGGATCCTATTGATGGAACTGCTGAAGCTCCAAGAGCAGCATCAGACCAATAGAGCTCACATTCAATCCATGGAGCTAAGGCTACAAGGTACAGAAAAGAAGCAACAACAAATGATGAGTTTCTTAGGGAGAGCTGTTGAAAATCCAGCTTTTATCCAGCAATTAGTCCAAGGAAGGGGGGAAATAAAGGAACTTGAAGATGAATACATTACTAGAAAAAGGCGACGACCAATTGATCAAGGGCCAAGTGGAGAATACTTATATCCCATGAAAGTTGAACCGCCAGAAGATTTCGGAGATTCTTTTGGGTTCGAAGTTTCTGAGCTGGAGGCACTTGCATTAGAGATTCAAGGATTCGGTAGAGCTAGGAGGGAATCACACGAGGAAGAACGTGGAGAGCTTGAGCAATATGATCGTGTGGATAAAGAATTACTTGACATGGGGTTTTGGGAAGAGTTACTAAATGAGGGGTTTGATGAAGAGTTGGGTCATAGAAACTAA

Network for GWHGAAZE009749

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00447.18	HSF_DNA-bind	20	129	1.60E-28

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.236
	SRR3591706	second leaf	0.141
	SRR3591707	mature leaf	1.090
	SRR3591708	Shoot apex	0.022
	SRR3591709	Stem	1.511
	SRR3591710	White floral bud	0.049
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.160
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.591
	SRR8316896	Juvenile bud stage	1.815
	SRR8316897	Juvenile bud stage	0.506
	SRR8316894	Third green stage	0.391
	SRR8316900	Third green stage	1.051
	SRR8316901	Third green stage	2.042
	SRR8316898	Complete white stage	0.341
	SRR8316899	Complete white stage	0.678
	SRR8316903	Complete white stage	0.616
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.006
	SRR8316906	Gold flowering stage	0.143
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.079
SRP132670	SRR6706286	Control	0.926
	SRR6706287	Light intensity 50%	0.602
	SRR6706288	Light intensity 20%	0.539
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.358
	CNS0095593	Slightly white alabastrum(diploid) 2	0.453
	CNS0095594	Slightly white alabastrum(diploid) 3	0.066
	CNS0095595	Whole white alabastrum(diploid) 2	0.089
	CNS0095596	Whole white alabastrum(diploid) 3	0.107
	CNS0095597	Whole white alabastrum(diploid) 4	0.039
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.287
	CNS0095600	Silvery flower (diploied) 3	0.299
	CNS0095601	Golden flower (diploid) 1	2.194
	CNS0095602	Golden flower (diploid) 2	0.314
	CNS0095603	Golden flower (diploid) 3	0.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.300
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.424
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.767
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.193
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.180
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.356
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.078
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.224
	CNS0095615	Golden flower (tetraploid) 3	0.121
CRA001975	CRR073297	Stem 1	0.039
	CRR073298	Stem 2	0.176
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.975
	CRR073301	Leaf 2	0.229
	CRR073302	Leaf 3	0.189
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.700
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.173
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.057
	CRR073319	Tawny withering 2	0.074
	CRR073320	Tawny withering 3	0.137