Gene detail

Detail information of GWHGAAZE009733

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011042443.1	0	PREDICTED: 3-ketoacyl-CoA synthase 19-like [Populus euphratica]
Swissprot	tr\|Q5XEP9\|KCS17_ARATH	4E-175	3-ketoacyl-CoA synthase 17
trEMBL	tr\|B9H8F7\|B9H8F7_POPTR	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT1G04220.1	1E-137	3-ketoacyl-CoA synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	116130602	116133244	-
GWHAAZE00000002	mRNA	116130602	116133244	-
GWHAAZE00000002	exon	116132705	116133244	-
GWHAAZE00000002	exon	116130602	116131405	-
GWHAAZE00000002	CDS	116132705	116133244	-
GWHAAZE00000002	CDS	116130602	116131405	-

Transcript Sequence
>GWHTAAZE009745 ATGTTTGCCATTACGGCAGCGCTTGTCTTCTTAACCTTAACAGCACTACTATTTCGTTTCAGTACAAAGAAACCTTGTCGTAAAATCTTCTTACTAGACTTTGCGTGTTATAAGCCCTCGGCCCATCAAATGTGCACCAGAGAAGAGGCTGTGGACCAAATTATGCGTTACGCGAATCTATCAAAAGAGTCGACAGAATTTGTGAAGAAGGTGATTAAGATAGGAGGACTAGGCAACTCCACGTACTTGCCAGAGGCCTTGCTAACAAAGCCTCCAAACCCATGCATGGAAAATGCAAGGAGAGAGACCGAGAGGGCGATGTTTGGGTCCATAGACGCGCTGTTGGAGAAGACGGGTGTGGAATGTAAGGATATACAGATATTAGTTGTGAACTGTAGCATTTTTAACGTGGTGCCTTCTCTATCTAGCGTGGTAGTGAATCGCTACAAGCTTAGGGAGGATGTTATCAGCTATAATCTAACTGGGATGGGATGTAGCGCCAGCCTCATCGCTATAGGCCTTGCCAAGCAACTCCTCCAGGTACATCCTAACATGTATGCTCTAGTGGTGAGTACAGAAAACATTACTGAGAATGAATACGAGGGACAGGATCACCCAATGTTACTAATCAATTGCTTATTCCGACTTGGTGGGGCCGCCATCCTCCTCTCAAATCGGCCTTCCGATCATCCCTTGTCAAAGTACCAGCTCATTCACACGGTCCACACGCACACAGCGAGTTCTAACCTTTCCTACAATTGCATTATGCAAGAAGAAGATGAACGCGGACGGAGGGGAATAAACATCACAAAAGATCTTTTGGTTGCAGAACACAAAGCCATGGAATCCAACATGACCTCACTTGGTTCCCTAATCCTTCCCTTATCTGAGCGAATCCGTTTGTACGCGAATTATATCATCCGGAAACTCCATGTGGCAAGGATCCAGCCGTATGTTCTTGATTTCAAAAAGGCCATTGATCACTTTGTTACACATGTTGGGGCGAAACCCGTAATGGATGAACTGCAGAAGACCTTAGGGTTTACCGATGCTGATATGGAACCTTCTAGAATGACCATGTATAGGTTTGGGAATACTTCCAGTAGTTCAGTGTGGTACGCATTGGCTTATGCTGAGGCAAAGGGGAGGATAAAGAAGGGCGATCGCGTGTGGCAGATTGCATTTGGGTCTGGGTTCAAGTGTATAAGTTTATTTTGGCGTGCCATCAGGAACGTTGATTATGAGGAGTTGAATCCATGGACGGCTGAGATCGATGGGTTTCCTGTAAACATGAACAGCCTCGAATCATCCCCTTATTACTTTGAACCATCTAAACAAAAATAA

Network for GWHGAAZE009733

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	26	309	9.80E-113
PF08541.11	ACP_syn_III_C	324	407	1.40E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	6.615
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.532
	SRR3591711	White flower	0.119
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.474
	SRR8316896	Juvenile bud stage	0.025
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.033
	SRR8316901	Third green stage	0.053
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.297
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.026
	SRR6706287	Light intensity 50%	0.017
	SRR6706288	Light intensity 20%	0.010
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.027
	CNS0095593	Slightly white alabastrum(diploid) 2	0.836
	CNS0095594	Slightly white alabastrum(diploid) 3	1.001
	CNS0095595	Whole white alabastrum(diploid) 2	0.446
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.242
	CNS0095598	Silvery flower (diploied) 1	0.405
	CNS0095599	Silvery flower (diploied) 2	0.049
	CNS0095600	Silvery flower (diploied) 3	0.031
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.083
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.794
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.394
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.956
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.330
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.058
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.832
	CRR073298	Stem 2	0.196
	CRR073299	Stem 3	0.585
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.059
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000