Detail information of GWHGAAZE009685


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008785246.10PREDICTED: pre-mRNA-splicing factor SLU7 [Phoenix dactylifera]
Swissprottr|Q9SHY8|SLU7A_ARATH0Pre-mRNA-splicing factor SLU7-A
trEMBLtr|U5D9F6|U5D9F6_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERN18865.1}
TAIR10AT1G65660.10Pre-mRNA splicing Prp18-interacting factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene115164446115169704-
GWHAAZE00000002mRNA115164446115169704-
GWHAAZE00000002exon115164446115164523-
GWHAAZE00000002exon115164630115164696-
GWHAAZE00000002exon115164879115164919-
GWHAAZE00000002exon115165057115165160-
GWHAAZE00000002exon115166189115166405-
GWHAAZE00000002exon115166613115166912-
GWHAAZE00000002exon115167015115167150-
GWHAAZE00000002exon115167331115167738-
GWHAAZE00000002exon115168095115168207-
GWHAAZE00000002exon115168304115168467-
GWHAAZE00000002exon115169493115169704-
GWHAAZE00000002five_prime_UTR115169509115169704-
GWHAAZE00000002CDS115169493115169508-
GWHAAZE00000002CDS115168304115168467-
GWHAAZE00000002CDS115168095115168207-
GWHAAZE00000002CDS115167331115167738-
GWHAAZE00000002CDS115167015115167150-
GWHAAZE00000002CDS115166613115166912-
GWHAAZE00000002CDS115166189115166405-
GWHAAZE00000002CDS115165057115165160-
GWHAAZE00000002CDS115164879115164919-
GWHAAZE00000002CDS115164630115164696-
GWHAAZE00000002CDS115164446115164523-
Transcript Sequence

Network for GWHGAAZE009685

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11708.9Slu71364031.70E-98
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12819SLU7 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.124
SRR3591706second leaf12.798
SRR3591707mature leaf17.587
SRR3591708Shoot apex20.001
SRR3591709Stem21.319
SRR3591710White floral bud32.698
SRR3591711White flower35.007
SRR3591712Green floral bud22.085
SRR3591713Yellow flower34.818
SRP173429 SRR8316895Juvenile bud stage 24.750
SRR8316896Juvenile bud stage 40.509
SRR8316897Juvenile bud stage 21.195
SRR8316894Third green stage 14.626
SRR8316900Third green stage 46.321
SRR8316901Third green stage 40.567
SRR8316898Complete white stage 21.787
SRR8316899Complete white stage 53.059
SRR8316903Complete white stage 39.823
SRR8316902Silver flowering stage21.659
SRR8316904Silver flowering stage33.502
SRR8316905Silver flowering stage15.070
SRR8316906Gold flowering stage 47.633
SRR8316907Gold flowering stage 49.099
SRR8316908Gold flowering stage 61.485
SRP132670SRR6706286Control78.402
SRR6706287Light intensity 50%73.524
SRR6706288Light intensity 20%70.450
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.543
CNS0095593Slightly white alabastrum(diploid) 231.070
CNS0095594Slightly white alabastrum(diploid) 332.923
CNS0095595Whole white alabastrum(diploid) 235.990
CNS0095596Whole white alabastrum(diploid) 329.791
CNS0095597Whole white alabastrum(diploid) 436.151
CNS0095598Silvery flower (diploied) 140.757
CNS0095599Silvery flower (diploied) 237.890
CNS0095600Silvery flower (diploied) 359.093
CNS0095601Golden flower (diploid) 136.092
CNS0095602Golden flower (diploid) 255.043
CNS0095603Golden flower (diploid) 355.751
CNS0095604Slightly white alabastrum(tetraploid) 146.684
CNS0095605Slightly white alabastrum(tetraploid) 239.569
CNS0095606Slightly white alabastrum(tetraploid) 365.223
CNS0095607Whole white alabastrum(tetraploid) 143.303
CNS0095608Whole white alabastrum(tetraploid) 237.489
CNS0095609Whole white alabastrum(tetraploid) 358.999
CNS0095610Silvery flower (tetraploid) 180.418
CNS0095611Silvery flower (tetraploid) 285.714
CNS0095612Silvery flower (tetraploid) 379.942
CNS0095613Golden flower (tetraploid) 153.705
CNS0095614Golden flower (tetraploid) 268.995
CNS0095615Golden flower (tetraploid) 393.246
CRA001975CRR073297Stem 162.555
CRR073298Stem 264.254
CRR073299Stem 360.570
CRR073300Leaf 172.381
CRR073301Leaf 265.916
CRR073302Leaf 358.483
CRR073303Juvenile bud 162.020
CRR073304Juvenile bud 259.028
CRR073305Juvenile bud 363.540
CRR073306Third green 154.470
CRR073307Third green 240.004
CRR073308Third green 349.987
CRR073309Second white 130.848
CRR073310Second white 239.449
CRR073311Second white 343.442
CRR073312Silver flowering 130.920
CRR073313Silver flowering 233.212
CRR073314Silver flowering 328.219
CRR073315Gold flowering 139.370
CRR073316Gold flowering 252.871
CRR073317Gold flowering 327.290
CRR073318Tawny withering 148.408
CRR073319Tawny withering 235.760
CRR073320Tawny withering 338.900