Gene detail

Detail information of GWHGAAZE009674

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009608326.1	0	PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase tricorner-like [Nicotiana tomentosiformis]
Swissprot	tr\|F4HYG2\|IRE3_ARATH	2E-82	Probable serine/threonine protein kinase IRE3 {ECO:0000305}
trEMBL	tr\|Q9LW99\|Q9LW99_MESCR	0	Protein kinase MK6 {ECO:0000313\|EMBL:CAB82852.1}
TAIR10	AT2G20470.1	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114788293	114798589	-
GWHAAZE00000002	mRNA	114788293	114798589	-
GWHAAZE00000002	exon	114798375	114798589	-
GWHAAZE00000002	exon	114796073	114796247	-
GWHAAZE00000002	exon	114794933	114795016	-
GWHAAZE00000002	exon	114794609	114794850	-
GWHAAZE00000002	exon	114794288	114794492	-
GWHAAZE00000002	exon	114793975	114794054	-
GWHAAZE00000002	exon	114793483	114793567	-
GWHAAZE00000002	exon	114792361	114792492	-
GWHAAZE00000002	exon	114792153	114792266	-
GWHAAZE00000002	exon	114791974	114792033	-
GWHAAZE00000002	exon	114789853	114789928	-
GWHAAZE00000002	exon	114789605	114789727	-
GWHAAZE00000002	exon	114788293	114788321	-
GWHAAZE00000002	CDS	114798375	114798589	-
GWHAAZE00000002	CDS	114796073	114796247	-
GWHAAZE00000002	CDS	114794933	114795016	-
GWHAAZE00000002	CDS	114794609	114794850	-
GWHAAZE00000002	CDS	114794288	114794492	-
GWHAAZE00000002	CDS	114793975	114794054	-
GWHAAZE00000002	CDS	114793483	114793567	-
GWHAAZE00000002	CDS	114792361	114792492	-
GWHAAZE00000002	CDS	114792153	114792266	-
GWHAAZE00000002	CDS	114791974	114792033	-
GWHAAZE00000002	CDS	114789853	114789928	-
GWHAAZE00000002	CDS	114789605	114789727	-
GWHAAZE00000002	CDS	114788293	114788321	-

Transcript Sequence
>GWHTAAZE009686 ATGGATTCAGCTAGGAGTTGGTTTCAAAAGTTTCAGCCACGAGATCGGTTGAGGTCTGCTTCTAAGAAAAATGAATCTACAGGGGAAGAAGAGTCAGGACCACTATCAGCCGAAGAAGCCTCAAATGTCACGAAACAGAAGGTAGCGGCAGCAAAGCAGTATATAGAAAACCATTACAAGGAGCAGATGAAGAATTTGCAGGAGAGGAAGGAGCGGCGAAATTTACTGGAGAAGAAATTGGCTGATGCGGATGTCTCAGAGGAAGATCAGAACAATCTATTAAAATTCTTAGAGAAGAAGGAAACTGAATACATGCGCCTTCAAAGGCACAAGATGGGTGCTGATGATTTTGAGTTGCTCACAATGATTGGAAAGGGTGCTTTTGGGGAGGTCCGAATTTGTAGGGAAAAGACAACAGGCCATGTATATGCCATGAAAAAGCTTAAAAAATCGGAAATGCTTCGTAGAGGGCAGGTTGAGCATGTGAAAGCTGAAAGGAATCTGCTTGCAGAGGTGGATAGCAACTGCATTGTCAAACTATATTGTTCTTTCCAAGACGATGAGTATCTATACCTCATTATGGAATATCTACCTGGCGGAGATATGATGACTCTACTTATGAGAAAGGATACATTGACTGATAATGAGGCCAGATTTTATGTTGCGGAAACAGTTTTGGCTATTGAATCTATACACAAACATAATTATGTTCATAGAGACATTAAGCCTGACAACTTGCTACTTGATAAATATGGTCATTTGAGACTTTCAGATTTTGGGCTTTGTAAACCTCTAGACTGTAGTACTCTAGAAGAGAAGGATTTTTCAATTGGGGATGGTGCTAATGGAAATTCACAGGCAGCTCCAGCACGCACTCAACAAGAGCAACTACAGCATTGGCAAAAAAATAGGCGAACACTTGCTTATTCAACCGTCGGTACACCTGATTATATTGCCCCAGAAGTTCTCCTGAAGAAAGGTTATGGGTTGGAATGTGATTGGTGGTCACTTGGTGCTATTATGTATGAAATGCTTGTTGGCTATCCACCTTTTTATTCTGACGACCCTATGTCAACATGTAGGAAGATTGTAAACTGGAAAACACATTTGAAGTTTCCTGAAGAAGCGGAGCTATCCTCAGAAGCAAAAGATCTTATCAGCAAACTGCTTTGCAATGTCAATCAGAGGCTGGGTTCAAAAGGCGCACATGAAATAAAGGTTCATCCCTGGTTTAAAGGTATTGATTGGGATAGACTATACCAAATGGAGGCTGCATTCATTCCTGAAGTTAATGATGAATTGGACACTCAAAACTTTGAAAAGTTTGATGAGGGTGAAAACCAAGCTCAGACTTCATCAAAAGCTGGTCCATGGAGAAAGGTAAGCTCCTTAATTTTGTTCATATTTATAGCTGAATTGAAGAAGAAAAATAACAAAGGGAAGAGACCATCCGTCAAATCACTCTTTGAAGATGAATCTTCTGATGCGCCCGAAACAGTTACGAGTGAAACAGCTACGAGTGAAACGGCGGGGCAAGGGAGCTTTTTGAATCTCTTGCCTCCCCAACTAGAAGTTTCTGAAAAGCAGAACACAGACCCAGATAGCATCACGGACTGCTAA

Network for GWHGAAZE009674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	118	411	3.70E-65

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.458
	SRR3591706	second leaf	5.549
	SRR3591707	mature leaf	3.651
	SRR3591708	Shoot apex	10.700
	SRR3591709	Stem	29.061
	SRR3591710	White floral bud	52.313
	SRR3591711	White flower	15.965
	SRR3591712	Green floral bud	46.792
	SRR3591713	Yellow flower	12.639
SRP173429	SRR8316895	Juvenile bud stage	9.825
	SRR8316896	Juvenile bud stage	17.549
	SRR8316897	Juvenile bud stage	6.822
	SRR8316894	Third green stage	10.478
	SRR8316900	Third green stage	40.367
	SRR8316901	Third green stage	35.429
	SRR8316898	Complete white stage	12.141
	SRR8316899	Complete white stage	29.629
	SRR8316903	Complete white stage	24.115
	SRR8316902	Silver flowering stage	7.946
	SRR8316904	Silver flowering stage	26.041
	SRR8316905	Silver flowering stage	6.572
	SRR8316906	Gold flowering stage	15.208
	SRR8316907	Gold flowering stage	13.240
	SRR8316908	Gold flowering stage	10.865
SRP132670	SRR6706286	Control	13.962
	SRR6706287	Light intensity 50%	16.425
	SRR6706288	Light intensity 20%	14.532
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.356
	CNS0095593	Slightly white alabastrum(diploid) 2	14.983
	CNS0095594	Slightly white alabastrum(diploid) 3	15.361
	CNS0095595	Whole white alabastrum(diploid) 2	33.851
	CNS0095596	Whole white alabastrum(diploid) 3	41.782
	CNS0095597	Whole white alabastrum(diploid) 4	30.504
	CNS0095598	Silvery flower (diploied) 1	9.093
	CNS0095599	Silvery flower (diploied) 2	8.416
	CNS0095600	Silvery flower (diploied) 3	12.758
	CNS0095601	Golden flower (diploid) 1	6.657
	CNS0095602	Golden flower (diploid) 2	8.281
	CNS0095603	Golden flower (diploid) 3	7.034
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.455
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.911
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.677
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.039
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.010
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.162
	CNS0095610	Silvery flower (tetraploid) 1	23.456
	CNS0095611	Silvery flower (tetraploid) 2	12.346
	CNS0095612	Silvery flower (tetraploid) 3	20.591
	CNS0095613	Golden flower (tetraploid) 1	6.005
	CNS0095614	Golden flower (tetraploid) 2	28.744
	CNS0095615	Golden flower (tetraploid) 3	15.322
CRA001975	CRR073297	Stem 1	9.460
	CRR073298	Stem 2	9.421
	CRR073299	Stem 3	5.832
	CRR073300	Leaf 1	21.747
	CRR073301	Leaf 2	15.517
	CRR073302	Leaf 3	9.617
	CRR073303	Juvenile bud 1	13.479
	CRR073304	Juvenile bud 2	11.396
	CRR073305	Juvenile bud 3	6.880
	CRR073306	Third green 1	6.279
	CRR073307	Third green 2	6.294
	CRR073308	Third green 3	15.823
	CRR073309	Second white 1	1.381
	CRR073310	Second white 2	3.588
	CRR073311	Second white 3	1.322
	CRR073312	Silver flowering 1	2.821
	CRR073313	Silver flowering 2	1.378
	CRR073314	Silver flowering 3	2.463
	CRR073315	Gold flowering 1	1.810
	CRR073316	Gold flowering 2	1.987
	CRR073317	Gold flowering 3	1.749
	CRR073318	Tawny withering 1	9.111
	CRR073319	Tawny withering 2	7.112
	CRR073320	Tawny withering 3	11.116