Gene detail

Detail information of GWHGAAZE009671

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009602201.1	0	PREDICTED: casein kinase I isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|P42158\|KC1D_ARATH	1E-152	Casein kinase I isoform delta-like
trEMBL	tr\|M1BS30\|M1BS30_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400051696}
TAIR10	AT3G23340.1	1E-135	casein kinase I-like 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114760914	114763571	-
GWHAAZE00000002	mRNA	114760914	114763571	-
GWHAAZE00000002	exon	114760914	114760994	-
GWHAAZE00000002	exon	114761071	114761144	-
GWHAAZE00000002	exon	114761331	114761457	-
GWHAAZE00000002	exon	114761734	114761818	-
GWHAAZE00000002	exon	114761938	114762001	-
GWHAAZE00000002	exon	114762105	114762166	-
GWHAAZE00000002	exon	114762944	114763014	-
GWHAAZE00000002	exon	114763226	114763321	-
GWHAAZE00000002	exon	114763401	114763571	-
GWHAAZE00000002	CDS	114763401	114763571	-
GWHAAZE00000002	CDS	114763226	114763321	-
GWHAAZE00000002	CDS	114762944	114763014	-
GWHAAZE00000002	CDS	114762105	114762166	-
GWHAAZE00000002	CDS	114761938	114762001	-
GWHAAZE00000002	CDS	114761734	114761818	-
GWHAAZE00000002	CDS	114761331	114761457	-
GWHAAZE00000002	CDS	114761071	114761144	-
GWHAAZE00000002	CDS	114760914	114760994	-

Transcript Sequence
>GWHTAAZE009683 ATGATGTTTCTTGTTGGTGAAGCGGGAATTCCTAACCTCAAATGGTATGGAGTTGAGGGTGAGTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTGGAAGATCTATTCAACTATTGCAATAGGAAGTTCTCTTTGAAAACAGTATTAATGCTTGCAGATCAACTGATTAACAGAGTTGAATATATGCACTCAAGAGGTTTTCTTCACCGTGATATAAAGCCTGACAACTTTTTAATGGGCCTAGGGCGCAAAGCAAACCAGGTATACGTCATCGACTTTGGCCTTGCAAAAAAGTATAGGGATCTTCAGACTCATAAGCACATACCATACAGGGAAAACAAGAACCTCACGGGCACAGCTCGGTATGCTAGCGTAAACACACACCTTGGAGTTGAACAAAGCAGAAGGGATGATCTTGAATCTCTTGGTTATGTGCTCATGTATTTTCTGAGAGGAAGTCTTCCCTGGCAGGGGTTGAAAGCTGGCACAAAAAAGCAGAAATACGACAAAATTAGTGAAAAGAAGATGTTAACTCCAATCGAGGTGCTCTGCAAATCATATCCATCAGAGTTCACATCATATTTTCACTACTGCCGATCATTACGCTTTGAAGACAAACCCGATTATTCATACTTAAAGAGGCTCTTCCGAGATTTATTTATTCATGAAGGTTATCAATTTGACTATGTATTTGATTGGACTATATTGAAGTACCCTCAGATTGGTTCCGGTTCCAGAGGACGGAATCTGGGTGGAAACACAGGTTTGAACGCAGGACCTTCTGCAGAGAGGCCAGGAAGGGCATCAGGCATGTCTCTAATCTAA

Network for GWHGAAZE009671

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	24	173	1.10E-18

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1

KEGG pathway

KO	Enzyme	pathway	mapID
K08960	CSNK1E	Wnt signaling pathway	map04310
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Hippo signaling pathway - multiple species	map04392
		FoxO signaling pathway	map04068
		Circadian rhythm	map04710
		Circadian rhythm - fly	map04711

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	80.394
	SRR3591706	second leaf	50.378
	SRR3591707	mature leaf	109.805
	SRR3591708	Shoot apex	49.900
	SRR3591709	Stem	69.649
	SRR3591710	White floral bud	60.125
	SRR3591711	White flower	50.928
	SRR3591712	Green floral bud	56.804
	SRR3591713	Yellow flower	52.502
SRP173429	SRR8316895	Juvenile bud stage	35.712
	SRR8316896	Juvenile bud stage	51.634
	SRR8316897	Juvenile bud stage	24.810
	SRR8316894	Third green stage	25.405
	SRR8316900	Third green stage	67.193
	SRR8316901	Third green stage	64.001
	SRR8316898	Complete white stage	28.948
	SRR8316899	Complete white stage	81.546
	SRR8316903	Complete white stage	58.033
	SRR8316902	Silver flowering stage	22.695
	SRR8316904	Silver flowering stage	45.962
	SRR8316905	Silver flowering stage	19.556
	SRR8316906	Gold flowering stage	49.619
	SRR8316907	Gold flowering stage	43.623
	SRR8316908	Gold flowering stage	42.290
SRP132670	SRR6706286	Control	70.471
	SRR6706287	Light intensity 50%	71.177
	SRR6706288	Light intensity 20%	76.864
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.698
	CNS0095593	Slightly white alabastrum(diploid) 2	35.773
	CNS0095594	Slightly white alabastrum(diploid) 3	27.481
	CNS0095595	Whole white alabastrum(diploid) 2	26.061
	CNS0095596	Whole white alabastrum(diploid) 3	33.285
	CNS0095597	Whole white alabastrum(diploid) 4	32.129
	CNS0095598	Silvery flower (diploied) 1	34.577
	CNS0095599	Silvery flower (diploied) 2	31.240
	CNS0095600	Silvery flower (diploied) 3	51.208
	CNS0095601	Golden flower (diploid) 1	28.271
	CNS0095602	Golden flower (diploid) 2	40.781
	CNS0095603	Golden flower (diploid) 3	38.506
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.599
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.486
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.108
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.689
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.934
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.435
	CNS0095610	Silvery flower (tetraploid) 1	46.127
	CNS0095611	Silvery flower (tetraploid) 2	42.236
	CNS0095612	Silvery flower (tetraploid) 3	39.058
	CNS0095613	Golden flower (tetraploid) 1	29.961
	CNS0095614	Golden flower (tetraploid) 2	52.463
	CNS0095615	Golden flower (tetraploid) 3	44.452
CRA001975	CRR073297	Stem 1	30.264
	CRR073298	Stem 2	26.810
	CRR073299	Stem 3	20.914
	CRR073300	Leaf 1	35.307
	CRR073301	Leaf 2	30.984
	CRR073302	Leaf 3	22.631
	CRR073303	Juvenile bud 1	21.261
	CRR073304	Juvenile bud 2	18.985
	CRR073305	Juvenile bud 3	27.254
	CRR073306	Third green 1	19.837
	CRR073307	Third green 2	16.190
	CRR073308	Third green 3	20.652
	CRR073309	Second white 1	9.084
	CRR073310	Second white 2	15.099
	CRR073311	Second white 3	10.920
	CRR073312	Silver flowering 1	11.361
	CRR073313	Silver flowering 2	6.239
	CRR073314	Silver flowering 3	6.746
	CRR073315	Gold flowering 1	17.915
	CRR073316	Gold flowering 2	23.232
	CRR073317	Gold flowering 3	10.059
	CRR073318	Tawny withering 1	36.703
	CRR073319	Tawny withering 2	31.452
	CRR073320	Tawny withering 3	39.738