Detail information of GWHGAAZE009668


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010265004.10PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Nelumbo nucifera]
Swissprottr|Q8VZQ4|2AB2C_ARATH0Probable serine/threonine protein phosphatase 2A regulatory subunit B''gamma
trEMBLtr|D7U325|D7U325_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI37142.3}
TAIR10AT5G28900.10Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene114727148114735790-
GWHAAZE00000002mRNA114727148114735790-
GWHAAZE00000002exon114735349114735790-
GWHAAZE00000002exon114734614114734675-
GWHAAZE00000002exon114734444114734500-
GWHAAZE00000002exon114734048114734188-
GWHAAZE00000002exon114733805114733893-
GWHAAZE00000002exon114733654114733734-
GWHAAZE00000002exon114732852114732907-
GWHAAZE00000002exon114732513114732755-
GWHAAZE00000002exon114732298114732403-
GWHAAZE00000002exon114732074114732173-
GWHAAZE00000002exon114730912114731017-
GWHAAZE00000002exon114730617114730718-
GWHAAZE00000002exon114730471114730532-
GWHAAZE00000002exon114730011114730112-
GWHAAZE00000002exon114729270114729417-
GWHAAZE00000002exon114729034114729143-
GWHAAZE00000002exon114727589114727745-
GWHAAZE00000002exon114727386114727511-
GWHAAZE00000002exon114727148114727288-
GWHAAZE00000002five_prime_UTR114735499114735790-
GWHAAZE00000002CDS114735349114735498-
GWHAAZE00000002CDS114734614114734675-
GWHAAZE00000002CDS114734444114734500-
GWHAAZE00000002CDS114734048114734188-
GWHAAZE00000002CDS114733805114733893-
GWHAAZE00000002CDS114733654114733734-
GWHAAZE00000002CDS114732852114732907-
GWHAAZE00000002CDS114732513114732755-
GWHAAZE00000002CDS114732298114732403-
GWHAAZE00000002CDS114732074114732173-
GWHAAZE00000002CDS114730912114731017-
GWHAAZE00000002CDS114730617114730718-
GWHAAZE00000002CDS114730471114730532-
GWHAAZE00000002CDS114730011114730112-
GWHAAZE00000002CDS114729270114729417-
GWHAAZE00000002CDS114729034114729143-
GWHAAZE00000002CDS114727589114727745-
GWHAAZE00000002CDS114727386114727511-
GWHAAZE00000002CDS114727148114727288-
Transcript Sequence

Network for GWHGAAZE009668

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17958.2EF-hand_133784781.00E-18
PF13499.7EF-hand_74935932.60E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11583PPP2R3 mRNA surveillance pathway map03015
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728

Gene Ontology

GO term OntologyName
GO:0005509molecular_functioncalcium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.268
SRR3591706second leaf13.383
SRR3591707mature leaf22.208
SRR3591708Shoot apex20.137
SRR3591709Stem20.909
SRR3591710White floral bud21.891
SRR3591711White flower26.747
SRR3591712Green floral bud16.041
SRR3591713Yellow flower27.898
SRP173429 SRR8316895Juvenile bud stage 12.074
SRR8316896Juvenile bud stage 16.711
SRR8316897Juvenile bud stage 7.471
SRR8316894Third green stage 7.119
SRR8316900Third green stage 16.901
SRR8316901Third green stage 15.747
SRR8316898Complete white stage 8.717
SRR8316899Complete white stage 27.253
SRR8316903Complete white stage 15.645
SRR8316902Silver flowering stage9.904
SRR8316904Silver flowering stage15.521
SRR8316905Silver flowering stage8.476
SRR8316906Gold flowering stage 26.308
SRR8316907Gold flowering stage 17.297
SRR8316908Gold flowering stage 24.816
SRP132670SRR6706286Control11.935
SRR6706287Light intensity 50%12.470
SRR6706288Light intensity 20%13.142
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.042
CNS0095593Slightly white alabastrum(diploid) 27.048
CNS0095594Slightly white alabastrum(diploid) 37.712
CNS0095595Whole white alabastrum(diploid) 27.811
CNS0095596Whole white alabastrum(diploid) 35.447
CNS0095597Whole white alabastrum(diploid) 47.180
CNS0095598Silvery flower (diploied) 114.568
CNS0095599Silvery flower (diploied) 212.047
CNS0095600Silvery flower (diploied) 322.269
CNS0095601Golden flower (diploid) 111.943
CNS0095602Golden flower (diploid) 220.392
CNS0095603Golden flower (diploid) 320.059
CNS0095604Slightly white alabastrum(tetraploid) 110.730
CNS0095605Slightly white alabastrum(tetraploid) 29.158
CNS0095606Slightly white alabastrum(tetraploid) 319.297
CNS0095607Whole white alabastrum(tetraploid) 15.609
CNS0095608Whole white alabastrum(tetraploid) 24.551
CNS0095609Whole white alabastrum(tetraploid) 312.937
CNS0095610Silvery flower (tetraploid) 123.416
CNS0095611Silvery flower (tetraploid) 223.884
CNS0095612Silvery flower (tetraploid) 321.823
CNS0095613Golden flower (tetraploid) 113.913
CNS0095614Golden flower (tetraploid) 219.606
CNS0095615Golden flower (tetraploid) 323.054
CRA001975CRR073297Stem 115.613
CRR073298Stem 212.750
CRR073299Stem 310.382
CRR073300Leaf 112.191
CRR073301Leaf 210.913
CRR073302Leaf 310.548
CRR073303Juvenile bud 18.459
CRR073304Juvenile bud 28.103
CRR073305Juvenile bud 311.119
CRR073306Third green 15.901
CRR073307Third green 24.774
CRR073308Third green 35.498
CRR073309Second white 17.818
CRR073310Second white 26.829
CRR073311Second white 38.510
CRR073312Silver flowering 16.792
CRR073313Silver flowering 25.343
CRR073314Silver flowering 34.797
CRR073315Gold flowering 18.351
CRR073316Gold flowering 216.903
CRR073317Gold flowering 38.542
CRR073318Tawny withering 19.629
CRR073319Tawny withering 27.632
CRR073320Tawny withering 39.081