Detail information of GWHGAAZE009652


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009781615.14.4056E-171PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Nicotiana sylvestris]
Swissprottr|Q8RXD4|BRCA1_ARATH1E-87Protein BREAST CANCER SUSCEPTIBILITY 1 homolog
trEMBLtr|A0A068U850|A0A068U850_COFCA6E-171Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03778.1}
TAIR10AT1G04020.12E-108breast cancer associated RING 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene114469663114475265-
GWHAAZE00000002mRNA114469663114475265-
GWHAAZE00000002exon114474801114475265-
GWHAAZE00000002exon114473674114473976-
GWHAAZE00000002exon114473268114473368-
GWHAAZE00000002exon114471876114472059-
GWHAAZE00000002exon114471684114471775-
GWHAAZE00000002exon114471320114471407-
GWHAAZE00000002exon114470866114471031-
GWHAAZE00000002exon114470633114470751-
GWHAAZE00000002exon114469663114469983-
GWHAAZE00000002CDS114474801114475265-
GWHAAZE00000002CDS114473674114473976-
GWHAAZE00000002CDS114473268114473368-
GWHAAZE00000002CDS114471876114472059-
GWHAAZE00000002CDS114471684114471775-
GWHAAZE00000002CDS114471320114471407-
GWHAAZE00000002CDS114470866114471031-
GWHAAZE00000002CDS114470633114470751-
GWHAAZE00000002CDS114469663114469983-
Transcript Sequence

Network for GWHGAAZE009652

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13771.7zf-HC5HC2H2843618.50E-12
PF00533.27BRCT4094723.30E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10683BARD1 Homologous recombination map03440

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.655
SRR3591706second leaf6.941
SRR3591707mature leaf4.950
SRR3591708Shoot apex14.752
SRR3591709Stem11.300
SRR3591710White floral bud5.173
SRR3591711White flower3.377
SRR3591712Green floral bud8.517
SRR3591713Yellow flower3.320
SRP173429 SRR8316895Juvenile bud stage 5.890
SRR8316896Juvenile bud stage 10.266
SRR8316897Juvenile bud stage 8.048
SRR8316894Third green stage 4.362
SRR8316900Third green stage 10.765
SRR8316901Third green stage 9.318
SRR8316898Complete white stage 3.191
SRR8316899Complete white stage 9.969
SRR8316903Complete white stage 4.002
SRR8316902Silver flowering stage1.430
SRR8316904Silver flowering stage1.879
SRR8316905Silver flowering stage0.789
SRR8316906Gold flowering stage 2.531
SRR8316907Gold flowering stage 2.697
SRR8316908Gold flowering stage 2.955
SRP132670SRR6706286Control6.590
SRR6706287Light intensity 50%5.852
SRR6706288Light intensity 20%6.611
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.603
CNS0095593Slightly white alabastrum(diploid) 27.836
CNS0095594Slightly white alabastrum(diploid) 38.309
CNS0095595Whole white alabastrum(diploid) 28.602
CNS0095596Whole white alabastrum(diploid) 36.110
CNS0095597Whole white alabastrum(diploid) 49.199
CNS0095598Silvery flower (diploied) 15.787
CNS0095599Silvery flower (diploied) 25.113
CNS0095600Silvery flower (diploied) 35.575
CNS0095601Golden flower (diploid) 14.567
CNS0095602Golden flower (diploid) 25.586
CNS0095603Golden flower (diploid) 34.835
CNS0095604Slightly white alabastrum(tetraploid) 18.437
CNS0095605Slightly white alabastrum(tetraploid) 27.028
CNS0095606Slightly white alabastrum(tetraploid) 37.542
CNS0095607Whole white alabastrum(tetraploid) 17.400
CNS0095608Whole white alabastrum(tetraploid) 26.305
CNS0095609Whole white alabastrum(tetraploid) 39.946
CNS0095610Silvery flower (tetraploid) 18.658
CNS0095611Silvery flower (tetraploid) 28.026
CNS0095612Silvery flower (tetraploid) 34.015
CNS0095613Golden flower (tetraploid) 13.495
CNS0095614Golden flower (tetraploid) 25.388
CNS0095615Golden flower (tetraploid) 30.451
CRA001975CRR073297Stem 18.409
CRR073298Stem 29.784
CRR073299Stem 35.677
CRR073300Leaf 110.572
CRR073301Leaf 28.527
CRR073302Leaf 37.074
CRR073303Juvenile bud 18.401
CRR073304Juvenile bud 26.325
CRR073305Juvenile bud 38.322
CRR073306Third green 10.638
CRR073307Third green 20.508
CRR073308Third green 30.536
CRR073309Second white 10.510
CRR073310Second white 20.713
CRR073311Second white 30.465
CRR073312Silver flowering 10.629
CRR073313Silver flowering 20.971
CRR073314Silver flowering 30.091
CRR073315Gold flowering 14.986
CRR073316Gold flowering 26.716
CRR073317Gold flowering 32.654
CRR073318Tawny withering 14.607
CRR073319Tawny withering 23.728
CRR073320Tawny withering 33.538