Gene detail

Detail information of GWHGAAZE009650

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274734.1	6.0729E-136	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Vitis vinifera]
Swissprot	tr\|Q8W034\|RNP1_ARATH	2E-82	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|F6HZN8\|F6HZN8_VITVI	2E-136	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60153.1}
TAIR10	AT4G14300.1	1E-69	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114456922	114459906	+
GWHAAZE00000002	mRNA	114456922	114459906	+
GWHAAZE00000002	exon	114456922	114457143	+
GWHAAZE00000002	exon	114458746	114459906	+
GWHAAZE00000002	CDS	114456922	114457143	+
GWHAAZE00000002	CDS	114458746	114459906	+

Transcript Sequence
>GWHTAAZE009662 ATGGATATAGATTTGGCGAAGCTATTCGTTGGAGGTATAGCATGGGACACCACAGACGAAACCCTAAGAGATTACTTCGGCAAGTACGGTGACGTCACTCAGACCGTTATCATGAGAGACAAGACCACCGGCCGACCTAGAGGCTTTGGTTTCGTCGTCTTCTCCGATTCTGCAGTCATCGACACTGTTCTCGAGGATAGACACGTCATTGATGGTCGAACTGTGGAGGCTAAGAAGGCTATGACAAGGGCAAGCCAGCTAACATCTAGACCTGCAAATGCTGGTAGAGGTTTTGGAGGACCAGGACATTACAGAAGTAAAAAAATATTTGTTGGAGGGTTGCCTTCCACCTTGACAGATGATCAATTCTGCCAGTATTTTGAGAAGTATGGCGATGTAACAGATGCAGTGATAATGTTCGACCAAAATACTAATAGACCTCGCGGTTTTGGTTTCATTTCATTTGACACTGAAGATGCTGTTGATAGAGTTATGGAGAAAAACTTCCATGAGCTGAATAACAAACTTGTTGAGGTGAAACGAGCTCTTCCTAAAGATGCAAATCTAGGTGGTGGTGGCGGTGGCCGTAGTGGAGGCTACCAAGGCTATGGTTCTTCTGGTGCCAATGTTAACACATTTGATAGCCAAATGGATGGCAATAGATTTGGGCAACCACAAACTACTGGTAGTGGTTACCCACCATATGCTGGCTATGGGCAACCAAGTTATGGTTATGGAGCTGCAAATAGCACCCTTCCATATGGTGGCTATGGTATTGGCGGTTATGGAGGTACGAATACTGGCTTTGGTGGCCCTGCTGGAGCATATGGAAACCCAAGTAACACAAACAATGTTTATGTTAGTGGCCCACCCAGTGCCTTGAAAAGCTCGTGGGCTAGCCAGGCTCCTGGATATGGTGCTGGGGGGTACAATGCAAGTGCAGGGTATGGGAATACTGTTCCTGTTTCTTGGAGTGCTCCAGGTAGTGGTGGTGCTGGTTCTGCACCAATGGGTCAGTCACCAAGTGGTGCTTCTGGTTATGGTAACCAAGTATATGGATATGGTAATTATGGGGGAAGTGAAGGACCTTACAATAATTCTAGTGGTTATGGAAATGTTGGTGGGCATGCTGGGAATGCCCCATTCCCAAAAGCAATGCTGGTGGCAATGACGAGCAACAAGGAATGGGTGGTGGCTACATGGGTAATGTTTATGGCGGTAATGGGTCTTCAGGGTATTAAAATGCAGCCTCGAGGTCTAACTCGACAAGCTCTGGGTTTTAAGCTATTTCACTGGCTGTGGGATCCCTGCATGATGTCAAAGGTTCCAGAAATGGTTGGATTGCTTGAATATCGTAGTAGTTTGCCGTATCTATTTTGCTAG

Network for GWHGAAZE009650

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	8	75	3.80E-15
PF00076.23	RRM_1	109	176	3.90E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.290
	SRR3591706	second leaf	11.749
	SRR3591707	mature leaf	16.519
	SRR3591708	Shoot apex	17.026
	SRR3591709	Stem	21.322
	SRR3591710	White floral bud	45.104
	SRR3591711	White flower	49.910
	SRR3591712	Green floral bud	37.984
	SRR3591713	Yellow flower	32.902
SRP173429	SRR8316895	Juvenile bud stage	17.767
	SRR8316896	Juvenile bud stage	24.940
	SRR8316897	Juvenile bud stage	6.852
	SRR8316894	Third green stage	10.199
	SRR8316900	Third green stage	24.044
	SRR8316901	Third green stage	27.230
	SRR8316898	Complete white stage	13.341
	SRR8316899	Complete white stage	53.348
	SRR8316903	Complete white stage	24.089
	SRR8316902	Silver flowering stage	18.578
	SRR8316904	Silver flowering stage	20.378
	SRR8316905	Silver flowering stage	10.064
	SRR8316906	Gold flowering stage	22.322
	SRR8316907	Gold flowering stage	26.575
	SRR8316908	Gold flowering stage	30.844
SRP132670	SRR6706286	Control	28.927
	SRR6706287	Light intensity 50%	27.796
	SRR6706288	Light intensity 20%	28.557
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.604
	CNS0095593	Slightly white alabastrum(diploid) 2	15.129
	CNS0095594	Slightly white alabastrum(diploid) 3	13.981
	CNS0095595	Whole white alabastrum(diploid) 2	11.921
	CNS0095596	Whole white alabastrum(diploid) 3	12.120
	CNS0095597	Whole white alabastrum(diploid) 4	14.862
	CNS0095598	Silvery flower (diploied) 1	30.323
	CNS0095599	Silvery flower (diploied) 2	15.234
	CNS0095600	Silvery flower (diploied) 3	26.971
	CNS0095601	Golden flower (diploid) 1	19.986
	CNS0095602	Golden flower (diploid) 2	27.092
	CNS0095603	Golden flower (diploid) 3	27.226
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.570
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.890
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.817
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.884
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.872
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.749
	CNS0095610	Silvery flower (tetraploid) 1	31.306
	CNS0095611	Silvery flower (tetraploid) 2	27.034
	CNS0095612	Silvery flower (tetraploid) 3	36.873
	CNS0095613	Golden flower (tetraploid) 1	22.037
	CNS0095614	Golden flower (tetraploid) 2	30.810
	CNS0095615	Golden flower (tetraploid) 3	36.398
CRA001975	CRR073297	Stem 1	43.416
	CRR073298	Stem 2	34.852
	CRR073299	Stem 3	33.651
	CRR073300	Leaf 1	32.160
	CRR073301	Leaf 2	33.578
	CRR073302	Leaf 3	31.726
	CRR073303	Juvenile bud 1	19.803
	CRR073304	Juvenile bud 2	21.413
	CRR073305	Juvenile bud 3	34.453
	CRR073306	Third green 1	6.504
	CRR073307	Third green 2	6.175
	CRR073308	Third green 3	8.337
	CRR073309	Second white 1	11.348
	CRR073310	Second white 2	10.966
	CRR073311	Second white 3	8.653
	CRR073312	Silver flowering 1	9.184
	CRR073313	Silver flowering 2	13.474
	CRR073314	Silver flowering 3	10.880
	CRR073315	Gold flowering 1	29.334
	CRR073316	Gold flowering 2	35.967
	CRR073317	Gold flowering 3	49.597
	CRR073318	Tawny withering 1	35.960
	CRR073319	Tawny withering 2	40.009
	CRR073320	Tawny withering 3	36.989