Gene detail

Detail information of GWHGAAZE009646

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002526559.1	9.2304E-154	transcription factor, putative [Ricinus communis]
Swissprot	tr\|Q8GUN5\|PHL1_ARATH	5E-79	Protein PHR1-LIKE 1
trEMBL	tr\|B9SKP0\|B9SKP0_RICCO	3E-154	Transcription factor, putative {ECO:0000313\|EMBL:EEF35837.1}
TAIR10	AT4G28610.1	2E-81	phosphate starvation response 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114420974	114424639	+
GWHAAZE00000002	mRNA	114420974	114424639	+
GWHAAZE00000002	exon	114420974	114421531	+
GWHAAZE00000002	exon	114421835	114422045	+
GWHAAZE00000002	exon	114422139	114422215	+
GWHAAZE00000002	exon	114422317	114422356	+
GWHAAZE00000002	exon	114423263	114423320	+
GWHAAZE00000002	exon	114423736	114423805	+
GWHAAZE00000002	exon	114424253	114424639	+
GWHAAZE00000002	CDS	114420974	114421531	+
GWHAAZE00000002	CDS	114421835	114422045	+
GWHAAZE00000002	CDS	114422139	114422215	+
GWHAAZE00000002	CDS	114422317	114422356	+
GWHAAZE00000002	CDS	114423263	114423320	+
GWHAAZE00000002	CDS	114423736	114423805	+
GWHAAZE00000002	CDS	114424253	114424639	+

Transcript Sequence
>GWHTAAZE009658 ATGGAGGCACGTCCCGCTATATGCGTTCAAAGATCAGGTCAAAGACAACTCAGTAACCATGGAGAATCTGGGGCTCTATCTTCACCTTTTCCCGTTCTTCCCTCCACTGCGTTGTCTTCCAATAGTGTGGCTGTCGGTCACATGTTTTCTTCATCTCCAGGATTGTCTACATATCTTTTCTCTTCCATTTCACCCCATGAAATGCATTCAACAAAGTCCCCTTTCATTCCTGAGGCATCAACTAACAGGCCACCTGTATTATCTGGAGTGCCTCAATGTACAGAATCAAGTTACTGTACCAAGGTAAACTACAGTGATACATGGTGTACAGATTCACTCCCTGATTTTCTTGAATATCCTGTAAATACCCCCACACCCCAAAATAGTCAAACACAAAGTGGTAATGGTGGTGATTGCGTGCTACCATTGGAGGACCTTAGCAAACAAAGTGATTGGCATGACTGGGCAGACGAGCTAATCACTGATGATGCTTTGCCAACTAATTGGAATGGCCAAATTGTGGATACTAATGTTGCAAATCCAGAGCTACAGGTTCGGATGGCATATCAGGTGCCTGGACCGTCTACGAATTTCTCAGTGGAGCGGCACCAAGTACAACAGCAGCTTCCGACTTCATCTAGGGAAATGTGTACTGTTGCTACACCACTGTCATCCGTAAATGGTGCCCCAGCTAAAGGGCGAATGCGATGGACTCCGGAACTCCATGAAGCCTTTGTTGAAGCTGTCAACAAACTTGGTGGCAGTGAAAGAGCTACTCCCAAGGGCGTGCTGAAGCAAATGAAAGTAGAAGGTTTAACCATCTATCATGTGAAAAGCCACCTGCAGAAGTATCGAACAGCTAGATACAAACCCGAGTTGTCAGAAGGATCTTTGGAGAAGAAATTGACTCCTCTTGAAGAATTTTCATCTCTAGACTTGAAAACGGGTCTTGAGATCACTGAAGCGCTACGATTACAGATGGAAGTTCAGAAAAGGCTGCATGAGCAGCTTGAGATTCAAAGAAATCTACAGCTGCAAATAGAAGAACAGGGTAAATACCTCCAGAAGATGTTTGAGAAGCAACACAAGTCAGGTGTCGACTTGCTCAACCCTTCATCATCATCCACCCCAGACAACCCATCTCCCTCTCCTCAGGCGAACGATGATGCGGTAAAAAATTCACCTGCCAGAGATGAACGTGGGGCTTCGAAGGCAAACAATTACGAAACTGCCACTGCGGCAGTATCTGAAGAATGTGCGGCCAAATTGAGAGGGATGCAAAAGACACCCAAGAATGATACTTCCAAGGATCCCGAGGCGAGTGTTGACCTCTCTGACTCCCTACTCTCAAAGCGTGCCAAACTAAATGATCAGCAAGATAAGCCCATTTTATCCCCATAA

Network for GWHGAAZE009646

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	234	285	4.80E-09
PF14379.7	Myb_CC_LHEQLE	318	364	1.70E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.620
	SRR3591706	second leaf	10.651
	SRR3591707	mature leaf	15.005
	SRR3591708	Shoot apex	13.515
	SRR3591709	Stem	33.062
	SRR3591710	White floral bud	23.320
	SRR3591711	White flower	24.663
	SRR3591712	Green floral bud	16.749
	SRR3591713	Yellow flower	26.499
SRP173429	SRR8316895	Juvenile bud stage	7.029
	SRR8316896	Juvenile bud stage	10.775
	SRR8316897	Juvenile bud stage	4.854
	SRR8316894	Third green stage	6.462
	SRR8316900	Third green stage	15.891
	SRR8316901	Third green stage	16.108
	SRR8316898	Complete white stage	7.229
	SRR8316899	Complete white stage	17.113
	SRR8316903	Complete white stage	10.899
	SRR8316902	Silver flowering stage	8.382
	SRR8316904	Silver flowering stage	12.816
	SRR8316905	Silver flowering stage	6.431
	SRR8316906	Gold flowering stage	20.704
	SRR8316907	Gold flowering stage	17.856
	SRR8316908	Gold flowering stage	17.987
SRP132670	SRR6706286	Control	12.212
	SRR6706287	Light intensity 50%	12.628
	SRR6706288	Light intensity 20%	14.321
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.801
	CNS0095593	Slightly white alabastrum(diploid) 2	9.891
	CNS0095594	Slightly white alabastrum(diploid) 3	12.801
	CNS0095595	Whole white alabastrum(diploid) 2	12.913
	CNS0095596	Whole white alabastrum(diploid) 3	11.610
	CNS0095597	Whole white alabastrum(diploid) 4	14.211
	CNS0095598	Silvery flower (diploied) 1	15.654
	CNS0095599	Silvery flower (diploied) 2	10.114
	CNS0095600	Silvery flower (diploied) 3	21.951
	CNS0095601	Golden flower (diploid) 1	15.150
	CNS0095602	Golden flower (diploid) 2	23.804
	CNS0095603	Golden flower (diploid) 3	20.998
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.095
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.633
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.761
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.308
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.005
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.494
	CNS0095610	Silvery flower (tetraploid) 1	15.113
	CNS0095611	Silvery flower (tetraploid) 2	20.448
	CNS0095612	Silvery flower (tetraploid) 3	21.923
	CNS0095613	Golden flower (tetraploid) 1	14.952
	CNS0095614	Golden flower (tetraploid) 2	16.462
	CNS0095615	Golden flower (tetraploid) 3	23.085
CRA001975	CRR073297	Stem 1	13.283
	CRR073298	Stem 2	14.353
	CRR073299	Stem 3	11.933
	CRR073300	Leaf 1	15.099
	CRR073301	Leaf 2	16.142
	CRR073302	Leaf 3	11.835
	CRR073303	Juvenile bud 1	12.904
	CRR073304	Juvenile bud 2	9.770
	CRR073305	Juvenile bud 3	16.592
	CRR073306	Third green 1	9.759
	CRR073307	Third green 2	7.318
	CRR073308	Third green 3	10.182
	CRR073309	Second white 1	16.474
	CRR073310	Second white 2	16.047
	CRR073311	Second white 3	21.399
	CRR073312	Silver flowering 1	21.187
	CRR073313	Silver flowering 2	26.122
	CRR073314	Silver flowering 3	25.304
	CRR073315	Gold flowering 1	8.495
	CRR073316	Gold flowering 2	10.465
	CRR073317	Gold flowering 3	7.253
	CRR073318	Tawny withering 1	19.872
	CRR073319	Tawny withering 2	19.084
	CRR073320	Tawny withering 3	15.454