Gene detail

Detail information of GWHGAAZE009634

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010652424.1	PREDICTED: ABC transporter C family member 5-like [Vitis vinifera]
Swissprot	tr\|Q7GB25\|AB5C_ARATH	ABC transporter C family member 5
trEMBL	tr\|F6HZR7\|F6HZR7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60183.1}
TAIR10	AT1G04120.1	multidrug resistance-associated protein 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	114187309	114195167	+
GWHAAZE00000002	mRNA	114187309	114195167	+
GWHAAZE00000002	exon	114187309	114189420	+
GWHAAZE00000002	exon	114189782	114190102	+
GWHAAZE00000002	exon	114190192	114190278	+
GWHAAZE00000002	exon	114191307	114192002	+
GWHAAZE00000002	exon	114192140	114192304	+
GWHAAZE00000002	exon	114193056	114193350	+
GWHAAZE00000002	exon	114193552	114193766	+
GWHAAZE00000002	exon	114193853	114194158	+
GWHAAZE00000002	exon	114194320	114194383	+
GWHAAZE00000002	exon	114194480	114194719	+
GWHAAZE00000002	exon	114195055	114195167	+
GWHAAZE00000002	CDS	114187309	114189420	+
GWHAAZE00000002	CDS	114189782	114190102	+
GWHAAZE00000002	CDS	114190192	114190278	+
GWHAAZE00000002	CDS	114191307	114192002	+
GWHAAZE00000002	CDS	114192140	114192304	+
GWHAAZE00000002	CDS	114193056	114193350	+
GWHAAZE00000002	CDS	114193552	114193766	+
GWHAAZE00000002	CDS	114193853	114194158	+
GWHAAZE00000002	CDS	114194320	114194383	+
GWHAAZE00000002	CDS	114194480	114194719	+
GWHAAZE00000002	CDS	114195055	114195167	+

Transcript Sequence
>GWHTAAZE009646 ATGGGTATCAATCTTTTATTCAGTGAAATCTCTAGATTTTATGCACTGAGTACAAGGTTTTCAGCTACAAACAAGCTATTTAGAACCTTTCAAGGTTTGCCCGCATTGGAATTATCATCAATTTGCATCAACTTGTTATTGGTTCTTGTGTTTCTCTTCATAGTGTCGACGAGGCAGATATTGGTGTGCTTAGGTCGAATTCGAATAATTAAGGACGATTCAGGTACCAATTCTGTTTCAGTTAGGCATAGTGTTGATGGTGAAATTCGAGGTATTGAAATTGGTAGGGGCTATAAAGCTTCAGTTTTTTGTTGCTTTTATGTTCTGTTCCTGCAAGTTTTGGTATTAAGTTTTGATGGTATTGGGTTGATAAGAGAGGCTGCACATGGTAAGGGTACAAATTGGACCCTCATATTGCTGCCTGCAGCTCAGGGTTTAGCTTGGTTTGTGTTGAGCTTTTCGGCCCTTTATTGTAAATTTAAGGCCACTGAGAAATTGCCATTGTTGTTAAGGGCATGGTGGTGTGTTTCATTTATCATATGTTTGTGTACCCTGTATGTTGATGGCAAAGGATTTGTAACAGAAGGCTCAAAACACTTTAGTTCTCATGTTTTGGCTAACTTTGCCGCCACCCCTGCTCTTGCTTTCCTCTGTTTTGTTGCAATCAGGGGTGACAGTGGTATACAAGTTTATCGAAACTCCGATCTTCAAGAGCCATTGTTGCTTGAAGAAGAAGCAGGGTGTCTTAAGGTTACTCCTTATAATGAAGCTGGTCTGTTCAGTTTGGCCACACTTTCCTGGTTGAATCCGATTCTTGCACTAGGTGCAAAGAGACCGCTCGAGCTGAAGGATATTCCACTTCTTGCACCAAAAGACCGTTCTAAGGCCAATTATAAGGTTTTGAATTCAAATTGGGAGAAGTTGAAAGTTGAAAATCCTTCAAAGCAGCCTTCTTTAGCTTGGGCTCTTCTAAAATCTTTCTGGAAGGAGGCAGCTCGTAATGCCGTTTTTGCGGGGTTGAATACGCTTGTTTCCTACGTTGGTCCATACATGATTAGTTACTTTGTAGATTACTTGGGGGGAAAGGAGACTTTCGCTCACGAGGGTTATATTCTTGCTGGAATATTCTTTGCGGCAAAGCTGGTGGAGACCCTAACAACCCGGCAGTGGTACCTTGGGGTCGACATTTTGGGCATGCATGTGAGATCTGCCCTCACAGCAATGGTGTATCGAAAGGGACTTAGGCTCTCGAGCTCGGCCAAACAAAGTCACACAAGTGGGGAGATTGTTAACTACATGGCAGTTGACGTTCAACGAGTGGGGGACTATTCTTGGTATCTCCATGATATATGGATGCTTCCGATGCAAATTATTCTTGCCCTCCTAATTCTTTATAAAAACGTCGGTATTGCTTCTGTTGCAACACTAATTGCGACCATCATCTCGATAGTTGTGACAATTCCACTGGCGAGGCTTCAAGAAGAATACCAGGACAAATTAATGACCGCCAAGGACGATAGAATGAGGAAAACTTCTGAATGTCTTAGGAACATGAGGATCCTCAAGTTGCAAGCTTGGGAGGAGAGGTACCGAGTGACGCTTGAGGAAATGCGGAGCGTGGAGTTCAAATGGCTAAGGAAAGCTCTCTATTCTCAGGCGTTTATTACGTTCTTCTTTTGGAGCTCCCCTATTTTCGTTTCGGCGGTTACTTTTGGGACTTCCATATTGCTGGGCGGTCAGCTTACTGCTGGGGGCGTCCTTTCGGCTCTGGCTACTTTTAGGATCCTTCAAGAACCGCTTAGGAATTTCCCAGACTTGGTGTCGATGATGGCTCAAACAAAAGTATCTCTTGATCGAATTACTGGGTTCCTTCAGGATGAAGAATTGCCTAAAGATGCGACCATTGTTCTACGCCAAGGCATCACAAATGTGGCAATAGAAATTATTGATGGTGAGTTCTCGTGGGACTCTTCTTCTCCAAGGCCAACTTTGTCGGGTATACAAATGAAGGTGGAGAAAGGAATGCATGTGGCTGTATGCGGAATGGTTGGGTCTGGAAAATCCAGCTTTCTTTCTTGCATCCTTGGTGAAATTCCCAAAATCTCTGGCATGGTTAGAATATGCGGATCTGCGGCTTACGTTTCTCAGTCAGCTTGGATACAATCAGGAAATATAGAAGAAAATATTCTGTTTGGTAGCCCAATGGATAAGGCAAAGTACAAGAGTGTTCTTCATGCTTGTTGTTTAAAAAAGGATTTGGAGCTTTTCTCACATGGAGATCAGACCATCATCGGTGAAAGAGGTATAAATCTGAGTGGTGGCCAGAAGCAACGAGTGCAGCTTGCCAGGGCACTCTATCAAGATGCAGATATTTATCTACTGGATGATCCCTTTAGTGCTGTTGATGCACATACTGGATCGGAATTATTTAAGGAGTACATACTGACTGCGCTAGCTACAAAGACGGTAATATATGTAACCCATCAGGTTGAGTTTCTGCCAGCTGCTGATACGATACTGGTTCTTAAGGAAGGTCATATTATCGAGGCTGGTAAATATGATGATCTCTTGCAAGCAGGAACTGATTTCAGTTCTTTGGTTTCAGCTCACCATGAAGCTATTGAAGCCATGGATATACCAAATCATTCATCCGAAGATTCAGATGAACATAATTCTCCTGATGGGTCCGTTCTAATGAGTAAAAAATGTGAGTCAATTGGAAATAATCTCGACATTTTGGCCAAGGAAGTGCAAGACGGTATATCGTCTTCAGACCAAAAGGCCATTAAAGAGAAAAAGAAAGCAAAACGTTTGAGGAAAAAGCAGCTTGTTCAAGATGAGGAAAGAGAGAGAGGAAGAGTTAGCATGAAAGTGTATTTGTCATATATGGGTGCAGCATACAAGGGCTTATTGATTCCGCTTATTATTATTGCACAAACTTTATTTCAGGTTCTTCAGATAGCTAGTAATTGGTGGATGGCTTGGGCAAACCCACAAACTGAAGGGGATAAATCCAGAACGAGTAGTATGGTCCTTATTGGTGTTTATATGGCACTTGCTTTTGGGAGCTCTTGGTTTATATTTGTTAGGGCTGTTCTTGTAGCTACATTTGGTCTGGCGGCTGCTCAAAAATTGTTTTTGAAAATGCTCACAAATGTGTTCAGAGCACCAATGTCTTTCTTCGACTCTACTCCAGCTGGGCGGATATTGAATCGTGTATCAATTGATCAAAGTGTTGTTGATCTTGATATTCCTTTTAGGCTTGGTGGATTTGCTTCAACAACAATCCAGCTTCTTGGTATAGTGGGTGTAATGACAACAGTTACCTGGCAAGTCTTGCTTCTTGTTGTTCCGATGGCAATTGCTTGCCTATGGATGCAGAAATATTACATGGCTTCATCAAGGGAACTGGTCCGCATTGTTAGTATCCAGAAATCTCCAATCATCCATCTTTTTGGGGAGTCAATTGCTGGAGCAGCCATAATTCGAGGATTTGGGCAAGAAAAGCGGTTCATGAAAAGGAACCTTTATCTTCTTGATTGTTTTGCTCGCCCATTCTTCTGCAGTCTTTCGGCTATTGAATGGCTCTGCCTGCGGATGGAGTTACTATCGACCTTTGTATTTTCTTTTTGTCTGGTTTTACTTGTGAGTTTTCCTCAAGGAAGTATTGATCCAAGTATGGCTGGCCTGGCTGTAACATATGGCCTTAATCTGAACGCACGATTATCAAGGTGGATACTTAGCTTTTGCAAGCTTGAAAACAAAATTATTTCTATAGAAAGGATTCATCAGTATTGCCAAATCCCCGGTGAAGCTCCACTAGTTATTGAAGATGCCCGGCCTCCATCCTTATGGCCAGAGGAAGGAAGAATTGAACTGATTGATTTAAAGGTACGTTATAAGGAGAGTCTTCCTGTGGTGCTCCATGGGGTAACGTGCACATTTCCAGGTGGGAAGAAGATTGGCATTGTTGGGCGCACTGGAAGTGGTAAATCGACTTTGATACAGGCTCTATTTCGACTGATTGAGCCAGCTGGTGGCAGAATTATTATAGACAACATTGATATTTCGACAATTGGTCTTCATGATCTACGTAGTCGTTTGAGTATCATACCCCAAGATCCAAGCTTATTTGAAGGGACCATCAGGGGCAATCTTGATCCTCTTCAAGAGCATTCTGATGAAGAGATATGGCAGGCACTTGACAAGTCTCAGCTCGGAGATATAGTTCGTCAAAAGGAGCTAAAGCTTGATACACCAGTTTTAGAAGATGGAGATAATTGGAGCGTGGGCCAACGACAACTTGTGTCGTTGGGACGGGCTTTGCTGAAGCAGGCAAGAATACTGGTACTTGATGAAGCAACGGCCTCAGTTGATTCAGCCACTGATAATCTTATCCAGAAGATTATCCGGACAGAGTTTGAGGCTTGCACTGTCTGTACTATTGCTCATCGTATCCCCACTGTTATTGACAGCGATCTTGTTCTTGTCCTCAGTGATGGTCGAGTTGCAGAGTTTGATACGCCGGTACGACTATTAGAGGACAAGTTTTCCATGTTTCTCAAGTTAGTATCAGAGTACTCATCAAGATCAAGTGGCATGCCCGATTTTTGA

Network for GWHGAAZE009634

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	336	600	8.60E-31
PF00005.28	ABC_tran	664	798	2.10E-17
PF00664.24	ABC_membrane	974	1216	3.00E-26
PF00005.28	ABC_tran	1308	1456	5.10E-30

Protein Sequence

>GWHPAAZE009640
MGINLLFSEISRFYALSTRFSATNKLFRTFQGLPALELSSICINLLLVLVFLFIVSTRQILVCLGRIRIIKDDSGTNSVSVRHSVDGEIRGIEIGRGYKASVFCCFYVLFLQVLVLSFDGIGLIREAAHGKGTNWTLILLPAAQGLAWFVLSFSALYCKFKATEKLPLLLRAWWCVSFIICLCTLYVDGKGFVTEGSKHFSSHVLANFAATPALAFLCFVAIRGDSGIQVYRNSDLQEPLLLEEEAGCLKVTPYNEAGLFSLATLSWLNPILALGAKRPLELKDIPLLAPKDRSKANYKVLNSNWEKLKVENPSKQPSLAWALLKSFWKEAARNAVFAGLNTLVSYVGPYMISYFVDYLGGKETFAHEGYILAGIFFAAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDIWMLPMQIILALLILYKNVGIASVATLIATIISIVVTIPLARLQEEYQDKLMTAKDDRMRKTSECLRNMRILKLQAWEERYRVTLEEMRSVEFKWLRKALYSQAFITFFFWSSPIFVSAVTFGTSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRITGFLQDEELPKDATIVLRQGITNVAIEIIDGEFSWDSSSPRPTLSGIQMKVEKGMHVAVCGMVGSGKSSFLSCILGEIPKISGMVRICGSAAYVSQSAWIQSGNIEENILFGSPMDKAKYKSVLHACCLKKDLELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYILTALATKTVIYVTHQVEFLPAADTILVLKEGHIIEAGKYDDLLQAGTDFSSLVSAHHEAIEAMDIPNHSSEDSDEHNSPDGSVLMSKKCESIGNNLDILAKEVQDGISSSDQKAIKEKKKAKRLRKKQLVQDEERERGRVSMKVYLSYMGAAYKGLLIPLIIIAQTLFQVLQIASNWWMAWANPQTEGDKSRTSSMVLIGVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLTNVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLLGIVGVMTTVTWQVLLLVVPMAIACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAAIIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFSFCLVLLVSFPQGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIHQYCQIPGEAPLVIEDARPPSLWPEEGRIELIDLKVRYKESLPVVLHGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAGGRIIIDNIDISTIGLHDLRSRLSIIPQDPSLFEGTIRGNLDPLQEHSDEEIWQALDKSQLGDIVRQKELKLDTPVLEDGDNWSVGQRQLVSLGRALLKQARILVLDEATASVDSATDNLIQKIIRTEFEACTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPVRLLEDKFSMFLKLVSEYSSRSSGMPDF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05665	ABCC1	ABC transporters	map02010
		Sphingolipid signaling pathway	map04071
		Vitamin digestion and absorption	map04977

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.907
	SRR3591706	second leaf	10.721
	SRR3591707	mature leaf	9.695
	SRR3591708	Shoot apex	15.446
	SRR3591709	Stem	27.239
	SRR3591710	White floral bud	76.610
	SRR3591711	White flower	56.632
	SRR3591712	Green floral bud	35.139
	SRR3591713	Yellow flower	34.619
SRP173429	SRR8316895	Juvenile bud stage	20.866
	SRR8316896	Juvenile bud stage	23.697
	SRR8316897	Juvenile bud stage	14.294
	SRR8316894	Third green stage	11.809
	SRR8316900	Third green stage	29.187
	SRR8316901	Third green stage	32.168
	SRR8316898	Complete white stage	33.133
	SRR8316899	Complete white stage	45.345
	SRR8316903	Complete white stage	71.596
	SRR8316902	Silver flowering stage	45.831
	SRR8316904	Silver flowering stage	66.101
	SRR8316905	Silver flowering stage	27.158
	SRR8316906	Gold flowering stage	81.731
	SRR8316907	Gold flowering stage	82.273
	SRR8316908	Gold flowering stage	73.331
SRP132670	SRR6706286	Control	25.732
	SRR6706287	Light intensity 50%	27.692
	SRR6706288	Light intensity 20%	29.319
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.723
	CNS0095593	Slightly white alabastrum(diploid) 2	15.554
	CNS0095594	Slightly white alabastrum(diploid) 3	14.738
	CNS0095595	Whole white alabastrum(diploid) 2	12.628
	CNS0095596	Whole white alabastrum(diploid) 3	11.344
	CNS0095597	Whole white alabastrum(diploid) 4	13.562
	CNS0095598	Silvery flower (diploied) 1	23.409
	CNS0095599	Silvery flower (diploied) 2	20.394
	CNS0095600	Silvery flower (diploied) 3	78.579
	CNS0095601	Golden flower (diploid) 1	18.987
	CNS0095602	Golden flower (diploid) 2	64.576
	CNS0095603	Golden flower (diploid) 3	62.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.814
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.957
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.407
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.291
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.701
	CNS0095610	Silvery flower (tetraploid) 1	36.996
	CNS0095611	Silvery flower (tetraploid) 2	38.542
	CNS0095612	Silvery flower (tetraploid) 3	76.251
	CNS0095613	Golden flower (tetraploid) 1	14.859
	CNS0095614	Golden flower (tetraploid) 2	26.354
	CNS0095615	Golden flower (tetraploid) 3	39.829
CRA001975	CRR073297	Stem 1	25.323
	CRR073298	Stem 2	22.005
	CRR073299	Stem 3	18.197
	CRR073300	Leaf 1	25.327
	CRR073301	Leaf 2	23.539
	CRR073302	Leaf 3	19.776
	CRR073303	Juvenile bud 1	21.048
	CRR073304	Juvenile bud 2	22.281
	CRR073305	Juvenile bud 3	36.022
	CRR073306	Third green 1	65.432
	CRR073307	Third green 2	36.789
	CRR073308	Third green 3	55.514
	CRR073309	Second white 1	39.058
	CRR073310	Second white 2	51.376
	CRR073311	Second white 3	74.808
	CRR073312	Silver flowering 1	68.669
	CRR073313	Silver flowering 2	81.690
	CRR073314	Silver flowering 3	70.956
	CRR073315	Gold flowering 1	11.038
	CRR073316	Gold flowering 2	24.194
	CRR073317	Gold flowering 3	6.318
	CRR073318	Tawny withering 1	36.299
	CRR073319	Tawny withering 2	38.668
	CRR073320	Tawny withering 3	31.352