Gene detail

Detail information of GWHGAAZE009603

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007200428.1	1.405E-171	hypothetical protein PRUPE_ppa008786mg [Prunus persica]
Swissprot	tr\|O24035\|PANC_LOTJA	3E-162	Pantoate--beta-alanine ligase (Precursor)
trEMBL	tr\|M5VKJ0\|M5VKJ0_PRUPE	5E-172	Uncharacterized protein {ECO:0000313\|EMBL:EMJ01627.1}
TAIR10	AT5G48840.1	2E-127	homolog of bacterial PANC

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	113344934	113346637	-
GWHAAZE00000002	mRNA	113344934	113346637	-
GWHAAZE00000002	exon	113344934	113345050	-
GWHAAZE00000002	exon	113345213	113345344	-
GWHAAZE00000002	exon	113345632	113345745	-
GWHAAZE00000002	exon	113346056	113346637	-
GWHAAZE00000002	CDS	113346056	113346637	-
GWHAAZE00000002	CDS	113345632	113345745	-
GWHAAZE00000002	CDS	113345213	113345344	-
GWHAAZE00000002	CDS	113344934	113345050	-

Transcript Sequence
>GWHTAAZE009615 ATGGCTACTAAAGAACCAAAGATCATTAGAGACAAGGACGAGATGAGACAATGGTCAAGGTCCATGAGAGCCCAAGGCAAGACTATAGGGTTAGTCCCCACCATGGGTTACCTCCATGAGGGCCATCTTTCTCTCCTCAGAGAAGCCCACAAACACACCCAACTCACTGTGGTCTCCATATATGTCAATCCAGGACAATTCTCACCAAATGAGGACCTTTCAACATACCCATCCGATTTTGACGGTGATATCAAGAAGCTCATGTCTGTTCATGGTGGCGTTGATGTTGTTTTTAACCCTCGAAACTTGTATGACTATGGAAAGGATAAATTGGTTAGAGTGGAGAGAGAAGAAAAGAAAGAGAAAGAGGGAGCAGTGGTGTCTTGCGTGGAATCTGGGGGTTTGGGGCATGAAACTTGGGTTAGAGTTGAAAGATTGGAAAAGGGTTTGTGTGGGAAGAGTAGGCCTGTTTTCTTCAGAGGAGTTGCAACCATTGTCACCAAGCTGTTTAATATAGTTGAACCTGATGTGGCAGTCTTTGGCAAGAAGGATTATCAGCAGTTGCAAATCATTCGGCGAATGGTCAGAGATCTTGACTTTGCCATAAAAGTGATTGGTACTGATATAATGCGAGAAGTTGACGGCCTCGCAATGAGCTCCCGTAATGTGCACCTCTCACTCCAAGAGAGGAATAAGGCCTTGTCAATAAGCCGGTCACTGTCAAAAGCGAAGGCTGCTGTGGAGAAAGGTCAAGTTAGTTGTAGAGAGTTGAGAAATTCAGTCACTGAAGCCATACAGGAAGCTGGTGGTAAAGTTGATTATGCAGAGATTGTAGAACAAGAGAGTTTGGAAACCGTGGAATGGATTAAGAACCCAGTTGTTTTGTGTGTAGCCGCATGGTTTGGAAAGGTCAGGCTGATCGATAACATTGAAATCAATATTTAA

Network for GWHGAAZE009603

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02569.16	Pantoate_ligase	7	310	1.20E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01918	panC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		beta-Alanine metabolism	map00410
		Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0015940	biological_process	pantothenate biosynthetic process
GO:0004592	molecular_function	pantoate-beta-alanine ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.040
	SRR3591706	second leaf	9.128
	SRR3591707	mature leaf	9.961
	SRR3591708	Shoot apex	12.004
	SRR3591709	Stem	11.242
	SRR3591710	White floral bud	22.071
	SRR3591711	White flower	31.859
	SRR3591712	Green floral bud	22.435
	SRR3591713	Yellow flower	40.843
SRP173429	SRR8316895	Juvenile bud stage	12.465
	SRR8316896	Juvenile bud stage	20.410
	SRR8316897	Juvenile bud stage	9.109
	SRR8316894	Third green stage	8.637
	SRR8316900	Third green stage	26.949
	SRR8316901	Third green stage	23.982
	SRR8316898	Complete white stage	5.967
	SRR8316899	Complete white stage	20.484
	SRR8316903	Complete white stage	9.060
	SRR8316902	Silver flowering stage	7.929
	SRR8316904	Silver flowering stage	11.068
	SRR8316905	Silver flowering stage	6.236
	SRR8316906	Gold flowering stage	20.012
	SRR8316907	Gold flowering stage	20.807
	SRR8316908	Gold flowering stage	17.906
SRP132670	SRR6706286	Control	16.622
	SRR6706287	Light intensity 50%	17.528
	SRR6706288	Light intensity 20%	16.998
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.285
	CNS0095593	Slightly white alabastrum(diploid) 2	19.834
	CNS0095594	Slightly white alabastrum(diploid) 3	18.906
	CNS0095595	Whole white alabastrum(diploid) 2	20.206
	CNS0095596	Whole white alabastrum(diploid) 3	21.868
	CNS0095597	Whole white alabastrum(diploid) 4	16.885
	CNS0095598	Silvery flower (diploied) 1	14.889
	CNS0095599	Silvery flower (diploied) 2	16.561
	CNS0095600	Silvery flower (diploied) 3	17.186
	CNS0095601	Golden flower (diploid) 1	16.321
	CNS0095602	Golden flower (diploid) 2	15.022
	CNS0095603	Golden flower (diploid) 3	14.934
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.564
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.060
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.100
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.492
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.225
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.280
	CNS0095610	Silvery flower (tetraploid) 1	17.088
	CNS0095611	Silvery flower (tetraploid) 2	14.723
	CNS0095612	Silvery flower (tetraploid) 3	11.846
	CNS0095613	Golden flower (tetraploid) 1	13.383
	CNS0095614	Golden flower (tetraploid) 2	14.602
	CNS0095615	Golden flower (tetraploid) 3	7.833
CRA001975	CRR073297	Stem 1	17.754
	CRR073298	Stem 2	14.859
	CRR073299	Stem 3	11.098
	CRR073300	Leaf 1	22.034
	CRR073301	Leaf 2	20.553
	CRR073302	Leaf 3	15.696
	CRR073303	Juvenile bud 1	15.723
	CRR073304	Juvenile bud 2	8.844
	CRR073305	Juvenile bud 3	11.379
	CRR073306	Third green 1	8.632
	CRR073307	Third green 2	8.134
	CRR073308	Third green 3	7.162
	CRR073309	Second white 1	10.925
	CRR073310	Second white 2	12.818
	CRR073311	Second white 3	13.894
	CRR073312	Silver flowering 1	8.112
	CRR073313	Silver flowering 2	6.514
	CRR073314	Silver flowering 3	7.245
	CRR073315	Gold flowering 1	5.778
	CRR073316	Gold flowering 2	6.824
	CRR073317	Gold flowering 3	6.038
	CRR073318	Tawny withering 1	10.540
	CRR073319	Tawny withering 2	16.590
	CRR073320	Tawny withering 3	8.851