Detail information of GWHGAAZE009590


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011073788.12.0983E-140PREDICTED: 60S ribosomal protein L13a-4 [Sesamum indicum]
Swissprottr|Q9FKC0|R13A4_ARATH3E-13960S ribosomal protein L13a-4
trEMBLtr|I3NMM6|I3NMM6_HEVBR2E-14060S ribosomal protein L13aA {ECO:0000313|EMBL:ADR71263.1}
TAIR10AT5G48760.21E-109Ribosomal protein L13 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene113065870113068536-
GWHAAZE00000002mRNA113065870113068536-
GWHAAZE00000002exon113065870113066013-
GWHAAZE00000002exon113067062113067149-
GWHAAZE00000002exon113067317113067433-
GWHAAZE00000002exon113068265113068536-
GWHAAZE00000002CDS113068265113068536-
GWHAAZE00000002CDS113067317113067433-
GWHAAZE00000002CDS113067062113067149-
GWHAAZE00000002CDS113065870113066013-
Transcript Sequence

Network for GWHGAAZE009590

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00572.19Ribosomal_L13111155.00E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02872RP-L13Ae, RPL13A Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf179.021
SRR3591706second leaf77.001
SRR3591707mature leaf43.331
SRR3591708Shoot apex212.107
SRR3591709Stem103.999
SRR3591710White floral bud74.766
SRR3591711White flower76.394
SRR3591712Green floral bud150.244
SRR3591713Yellow flower55.463
SRP173429 SRR8316895Juvenile bud stage 94.005
SRR8316896Juvenile bud stage 126.945
SRR8316897Juvenile bud stage 61.073
SRR8316894Third green stage 50.302
SRR8316900Third green stage 162.984
SRR8316901Third green stage 157.611
SRR8316898Complete white stage 39.083
SRR8316899Complete white stage 178.576
SRR8316903Complete white stage 49.390
SRR8316902Silver flowering stage26.719
SRR8316904Silver flowering stage24.620
SRR8316905Silver flowering stage14.944
SRR8316906Gold flowering stage 45.709
SRR8316907Gold flowering stage 48.399
SRR8316908Gold flowering stage 52.495
SRP132670SRR6706286Control156.311
SRR6706287Light intensity 50%159.719
SRR6706288Light intensity 20%173.013
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1151.470
CNS0095593Slightly white alabastrum(diploid) 2169.643
CNS0095594Slightly white alabastrum(diploid) 3153.359
CNS0095595Whole white alabastrum(diploid) 2143.557
CNS0095596Whole white alabastrum(diploid) 3158.411
CNS0095597Whole white alabastrum(diploid) 4118.782
CNS0095598Silvery flower (diploied) 180.519
CNS0095599Silvery flower (diploied) 269.919
CNS0095600Silvery flower (diploied) 374.048
CNS0095601Golden flower (diploid) 172.704
CNS0095602Golden flower (diploid) 271.377
CNS0095603Golden flower (diploid) 375.905
CNS0095604Slightly white alabastrum(tetraploid) 1174.873
CNS0095605Slightly white alabastrum(tetraploid) 2170.506
CNS0095606Slightly white alabastrum(tetraploid) 3229.578
CNS0095607Whole white alabastrum(tetraploid) 1111.903
CNS0095608Whole white alabastrum(tetraploid) 2101.431
CNS0095609Whole white alabastrum(tetraploid) 3181.799
CNS0095610Silvery flower (tetraploid) 172.467
CNS0095611Silvery flower (tetraploid) 275.754
CNS0095612Silvery flower (tetraploid) 355.295
CNS0095613Golden flower (tetraploid) 145.926
CNS0095614Golden flower (tetraploid) 264.733
CNS0095615Golden flower (tetraploid) 334.456
CRA001975CRR073297Stem 1115.284
CRR073298Stem 2124.333
CRR073299Stem 3140.270
CRR073300Leaf 1132.565
CRR073301Leaf 2141.071
CRR073302Leaf 3167.224
CRR073303Juvenile bud 1169.091
CRR073304Juvenile bud 2138.767
CRR073305Juvenile bud 3141.837
CRR073306Third green 121.042
CRR073307Third green 226.290
CRR073308Third green 331.427
CRR073309Second white 131.756
CRR073310Second white 225.481
CRR073311Second white 318.086
CRR073312Silver flowering 117.544
CRR073313Silver flowering 222.638
CRR073314Silver flowering 319.883
CRR073315Gold flowering 148.329
CRR073316Gold flowering 245.072
CRR073317Gold flowering 359.160
CRR073318Tawny withering 1117.439
CRR073319Tawny withering 2105.249
CRR073320Tawny withering 3115.210