Gene detail

Detail information of GWHGAAZE009574

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010104178.1	0	Oleoyl-acyl carrier protein thioesterase [Morus notabilis]
Swissprot	tr\|Q42712\|FATA_CORSA	0	Oleoyl-acyl carrier protein thioesterase, chloroplastic (Precursor; Fragment)
trEMBL	tr\|W9RN81\|W9RN81_9ROSA	0	Oleoyl-acyl carrier protein thioesterase {ECO:0000313\|EMBL:EXB99110.1}
TAIR10	AT3G25110.1	1E-144	fatA acyl-ACP thioesterase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	112652906	112655793	+
GWHAAZE00000002	mRNA	112652906	112655793	+
GWHAAZE00000002	exon	112652906	112653271	+
GWHAAZE00000002	exon	112653935	112654068	+
GWHAAZE00000002	exon	112654173	112654286	+
GWHAAZE00000002	exon	112654620	112654715	+
GWHAAZE00000002	exon	112655110	112655197	+
GWHAAZE00000002	exon	112655277	112655345	+
GWHAAZE00000002	exon	112655518	112655793	+
GWHAAZE00000002	CDS	112652906	112653271	+
GWHAAZE00000002	CDS	112653935	112654068	+
GWHAAZE00000002	CDS	112654173	112654286	+
GWHAAZE00000002	CDS	112654620	112654715	+
GWHAAZE00000002	CDS	112655110	112655197	+
GWHAAZE00000002	CDS	112655277	112655345	+
GWHAAZE00000002	CDS	112655518	112655793	+

Transcript Sequence
>GWHTAAZE009586 ATGTTGTTGAAAGGTGCATTAGCAGCACCAACAACATACAATGCTGCTGCTATTCCTTCAACTGACCATATTCAAGCCCTAACTACTATTACTCAATGCCGATTCCTCAATTCCATCTCCGTTCGCTGTCGAAACCCCGCCGTTCACTGCGTTTCATCTCCTAATAGAACTCCGGTTCTGTCTGTGTATACCGGAGACCTTGTGGCCGGTTCGGAGAAGGATGAGGAGGAGAGCCTGGCGGACCGGCTCCGGTTGGGGAGCTTGACGGAGGAGGGACTATCGTACAAGGAGAAGTTCATAGTTAGGTCTTATGAAGTCGGGGTTAACAAAACTGCCACTGTTGAAACCATTGCTAATCTCTTACAGGAGGTAGGGTGCAACCATGCTCAGAGTGTGGGATTTTCAACTGATGGATTTGCCACTACCCCCACCATGAGAAAATTGCATCTTATTTGGGTGACTGCACGTATGCATATTGAAATCTACAAATACCCAGCTTGGAGTGATGTGGTTGAAATAGAGACATGGTGCCAGAGCGAAGGAAGGATTGGCACTAGACGCGATTGGATTCTCAAAGACTTTGCTAATGGAGAAATCATTGGAAGGGCTACAAGCAAGTGGGTGATGATGAATCAAGATTCTAGACGGCTTCAGAAAGTTACTGATGATGTTCGAGATGAATACTTAGTTTTCTGCCCAAAAACACTTAGATTAGCATTTCCAGAAGAGAACAATAGCAGCCTGAGGAAAATATCAAAACTGGAAGATCCTTCTCAGTATTATAGCCTAGGACTGGTGCCAAGAAGAGCTGACCTGGACATGAACCAGCATGTGAACAATGTCACCTACATTGGATGGCTTCTAGAGAGCATGCCTCAAGAAGTCATTGACACGCATGAACTGAGAAGCATCACTTTAGACTATAGACGCGAATGCCAACGTGGCGACGTAGTTGATTCTCTCACTAGTCCAGAACCAATGGAGGATACTGCTGCTGTTTCTGATCTTAAAGGAACTAATGGATCCGCCACTACAAAAGATGGGCAAGAATCCTGCCAATTCTTGCATTTGTTAAGATTATCTGGTGATGGGCTTGAAATAAACAGGGGACGCACTGACTGGAGAAAGAAACCTGAGAAATAA

Network for GWHGAAZE009574

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01643.18	Acyl-ACP_TE	92	376	1.40E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10782	FATA	Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016790	molecular_function	thiolester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.109
	SRR3591706	second leaf	21.269
	SRR3591707	mature leaf	6.592
	SRR3591708	Shoot apex	33.580
	SRR3591709	Stem	14.757
	SRR3591710	White floral bud	160.224
	SRR3591711	White flower	237.797
	SRR3591712	Green floral bud	35.968
	SRR3591713	Yellow flower	197.040
SRP173429	SRR8316895	Juvenile bud stage	17.677
	SRR8316896	Juvenile bud stage	33.482
	SRR8316897	Juvenile bud stage	16.335
	SRR8316894	Third green stage	16.133
	SRR8316900	Third green stage	59.876
	SRR8316901	Third green stage	47.960
	SRR8316898	Complete white stage	37.405
	SRR8316899	Complete white stage	41.742
	SRR8316903	Complete white stage	50.543
	SRR8316902	Silver flowering stage	244.201
	SRR8316904	Silver flowering stage	379.375
	SRR8316905	Silver flowering stage	243.470
	SRR8316906	Gold flowering stage	748.826
	SRR8316907	Gold flowering stage	656.047
	SRR8316908	Gold flowering stage	679.348
SRP132670	SRR6706286	Control	52.663
	SRR6706287	Light intensity 50%	55.106
	SRR6706288	Light intensity 20%	57.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.573
	CNS0095593	Slightly white alabastrum(diploid) 2	33.838
	CNS0095594	Slightly white alabastrum(diploid) 3	32.252
	CNS0095595	Whole white alabastrum(diploid) 2	39.726
	CNS0095596	Whole white alabastrum(diploid) 3	50.464
	CNS0095597	Whole white alabastrum(diploid) 4	37.745
	CNS0095598	Silvery flower (diploied) 1	42.578
	CNS0095599	Silvery flower (diploied) 2	41.102
	CNS0095600	Silvery flower (diploied) 3	258.903
	CNS0095601	Golden flower (diploid) 1	69.414
	CNS0095602	Golden flower (diploid) 2	173.621
	CNS0095603	Golden flower (diploid) 3	169.048
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.698
	CNS0095605	Slightly white alabastrum(tetraploid) 2	55.011
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.938
	CNS0095607	Whole white alabastrum(tetraploid) 1	54.891
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.385
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.577
	CNS0095610	Silvery flower (tetraploid) 1	208.027
	CNS0095611	Silvery flower (tetraploid) 2	256.024
	CNS0095612	Silvery flower (tetraploid) 3	869.330
	CNS0095613	Golden flower (tetraploid) 1	240.011
	CNS0095614	Golden flower (tetraploid) 2	232.488
	CNS0095615	Golden flower (tetraploid) 3	439.528
CRA001975	CRR073297	Stem 1	35.652
	CRR073298	Stem 2	36.618
	CRR073299	Stem 3	31.273
	CRR073300	Leaf 1	65.300
	CRR073301	Leaf 2	57.917
	CRR073302	Leaf 3	62.590
	CRR073303	Juvenile bud 1	68.067
	CRR073304	Juvenile bud 2	80.524
	CRR073305	Juvenile bud 3	65.165
	CRR073306	Third green 1	918.001
	CRR073307	Third green 2	610.011
	CRR073308	Third green 3	622.186
	CRR073309	Second white 1	890.688
	CRR073310	Second white 2	835.796
	CRR073311	Second white 3	842.812
	CRR073312	Silver flowering 1	703.332
	CRR073313	Silver flowering 2	583.271
	CRR073314	Silver flowering 3	516.596
	CRR073315	Gold flowering 1	7.284
	CRR073316	Gold flowering 2	11.644
	CRR073317	Gold flowering 3	9.086
	CRR073318	Tawny withering 1	36.339
	CRR073319	Tawny withering 2	18.068
	CRR073320	Tawny withering 3	26.593