Gene detail

Detail information of GWHGAAZE009561

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15727.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SZ46\|C82C4_ARATH	7E-157	Cytochrome P450 82C4
trEMBL	tr\|A0A068V5B3\|A0A068V5B3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_105 {ECO:0000313\|EMBL:CDP15727.1}
TAIR10	AT4G31940.1	5E-128	cytochrome P450, family 82, subfamily C, polypeptide 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	112434488	112438467	+
GWHAAZE00000002	mRNA	112434488	112438467	+
GWHAAZE00000002	exon	112434488	112435089	+
GWHAAZE00000002	exon	112435175	112435415	+
GWHAAZE00000002	exon	112436261	112436333	+
GWHAAZE00000002	exon	112437866	112438467	+
GWHAAZE00000002	CDS	112434488	112435089	+
GWHAAZE00000002	CDS	112435175	112435415	+
GWHAAZE00000002	CDS	112436261	112436333	+
GWHAAZE00000002	CDS	112437866	112438467	+

Transcript Sequence
>GWHTAAZE009573 ATGGATTATCTCACTCAGTTCTTAGCAATTCTAGGACTTTTAGCTTTGTTCCTCACCTTTGGTTTCCGTAAAACAATGAAAAATGTCGCCCCAGGACCATCTGGGGCGTGGCCCATAATAGGCCACTTGCACCTACTACGGGGCAAAGACCCTGTGGCACGTACACTTGGAGCCATGGCTGACAAGCATGGCCCCATTTTCTCACTCCAGCTCGGCAGTTGCCAAGCAATAGTGGTGAGTGGTTGGGAGATTGCGAAGGAGTGCTTTACCACCAACGACAAAACTTTCGCTTCACGCCCAAGTATGGCCATAGCCAAGTATTTGTCCTATGAGAACGCGGTATTTGCTCTGGCACCTTATGGACCGTACTGGCGCGAGGTTCGAAAAATGGTCACCTTGACACTCTTCACGAACCACCAGCTAGAGAAGCTCAAGCATATCCGAGCCACAGAAGTAGACTGTAGTGTCAAAGATTTGCACTTAAAGTGCTCAAAGGATGGAGAGGTTCCAACGGAGGTGGCCATAAACAAGTGGATTGAAGACTTGACAATGGATATAAGCATTAGGATGCTAGTTGGGAAGCGATTTAGCAGGGAGAGAAGTATTGAATGGTTGGACATTGGAGGGCATGTGAAATCGATGAAGCAAACGGCTAAGGAACTTGATCGAGTCATTGGCAAATGGCTTGAGGAACATATTCAGAAGAGAAATGTTTGTGGTGTCGAGGGGGGGCGAGATTCTGATGGTGATGAAGACTTCATGGATGTGATGCTGTCAAGCCTAGCAAAGGACGTGATAGTCTCCGACCATAAGCATGACAACATTATCAAGGCAACAACACTGGGCACGGTGATGGTGGTTATCGTGGTGGTGGCACTGCCATGGAAGAAAAAGTGGGGAAAGAAGTGGAAGAGCAAAAGCACAGCCGATACACTAATATGGGCTTTATCTTTACTTTTGAATAACCGGCACGAACTAAAAACCGTCCAAGACGAACTAGACGCTAAAGTGGGAAGAAATAAGTGGGTAGAAGAATCAGATATCAGCAACCTAACGTATCTACAAGCCGTAGTGAAGGAGACCCTACGCTTATACCCACCGGGTCCCCTAGCCGGACCCCACTTAGCCACGGAAGACTGTAACGTTAGTGGCTATCACGTTCCAAAGGGGACACGTTTGATAGTTAACCTTTGGAAGCTGCACCGAGACCCTAGGGTGTGGTCAAACCCTTGTGAGTTTCAACCAGGGAGGTTCCTCAAGGAGCACACGGGGGTTAATTTTTCAGGGCGGAACTTTGAGTACATTCCTTTTAGCTCAGGGAGGAGAATGTGCCCAGCTACGACGTTTGCCTTACAAGTGATTAATTTGGCACTTGCTCGTTTACTTCAAGGGTATGACATATTGACACCTAAGGGAATGCCAGTGGATATGCGTGAGGGCTTAGGTATCGCCTTGCCCAAGGTGGAACCACTTCAAGTAATTATCACTCCTCGGCTTCCTTCGGAGCTCTATCAGTAA

Network for GWHGAAZE009561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	31	215	2.50E-21
PF00067.23	p450	308	488	1.60E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17961	CYP82G1	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.410
	SRR3591706	second leaf	0.466
	SRR3591707	mature leaf	4.895
	SRR3591708	Shoot apex	0.497
	SRR3591709	Stem	1.284
	SRR3591710	White floral bud	961.161
	SRR3591711	White flower	1668.317
	SRR3591712	Green floral bud	106.035
	SRR3591713	Yellow flower	2181.612
SRP173429	SRR8316895	Juvenile bud stage	10.949
	SRR8316896	Juvenile bud stage	26.997
	SRR8316897	Juvenile bud stage	12.218
	SRR8316894	Third green stage	9.753
	SRR8316900	Third green stage	22.529
	SRR8316901	Third green stage	35.190
	SRR8316898	Complete white stage	1549.347
	SRR8316899	Complete white stage	74.469
	SRR8316903	Complete white stage	2588.125
	SRR8316902	Silver flowering stage	2894.881
	SRR8316904	Silver flowering stage	4418.281
	SRR8316905	Silver flowering stage	2350.186
	SRR8316906	Gold flowering stage	5112.843
	SRR8316907	Gold flowering stage	4972.881
	SRR8316908	Gold flowering stage	4186.141
SRP132670	SRR6706286	Control	163.997
	SRR6706287	Light intensity 50%	371.654
	SRR6706288	Light intensity 20%	63.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.369
	CNS0095593	Slightly white alabastrum(diploid) 2	25.029
	CNS0095594	Slightly white alabastrum(diploid) 3	55.161
	CNS0095595	Whole white alabastrum(diploid) 2	27.368
	CNS0095596	Whole white alabastrum(diploid) 3	30.084
	CNS0095597	Whole white alabastrum(diploid) 4	53.672
	CNS0095598	Silvery flower (diploied) 1	641.577
	CNS0095599	Silvery flower (diploied) 2	915.243
	CNS0095600	Silvery flower (diploied) 3	5749.222
	CNS0095601	Golden flower (diploid) 1	952.772
	CNS0095602	Golden flower (diploid) 2	4652.495
	CNS0095603	Golden flower (diploid) 3	4490.711
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.468
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.328
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.636
	CNS0095607	Whole white alabastrum(tetraploid) 1	63.628
	CNS0095608	Whole white alabastrum(tetraploid) 2	51.946
	CNS0095609	Whole white alabastrum(tetraploid) 3	110.084
	CNS0095610	Silvery flower (tetraploid) 1	5861.745
	CNS0095611	Silvery flower (tetraploid) 2	6395.403
	CNS0095612	Silvery flower (tetraploid) 3	4406.688
	CNS0095613	Golden flower (tetraploid) 1	5065.204
	CNS0095614	Golden flower (tetraploid) 2	4194.569
	CNS0095615	Golden flower (tetraploid) 3	8022.865
CRA001975	CRR073297	Stem 1	43.080
	CRR073298	Stem 2	45.342
	CRR073299	Stem 3	69.781
	CRR073300	Leaf 1	11.851
	CRR073301	Leaf 2	10.191
	CRR073302	Leaf 3	17.854
	CRR073303	Juvenile bud 1	6.055
	CRR073304	Juvenile bud 2	266.397
	CRR073305	Juvenile bud 3	8.755
	CRR073306	Third green 1	6079.853
	CRR073307	Third green 2	4142.049
	CRR073308	Third green 3	4438.211
	CRR073309	Second white 1	3128.290
	CRR073310	Second white 2	3280.496
	CRR073311	Second white 3	2847.278
	CRR073312	Silver flowering 1	2489.052
	CRR073313	Silver flowering 2	2272.205
	CRR073314	Silver flowering 3	2149.373
	CRR073315	Gold flowering 1	1.890
	CRR073316	Gold flowering 2	1.148
	CRR073317	Gold flowering 3	4.154
	CRR073318	Tawny withering 1	5.222
	CRR073319	Tawny withering 2	11.295
	CRR073320	Tawny withering 3	3.388