Gene detail

Detail information of GWHGAAZE009549

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007049657.1	0	Oxidoreductase, zinc-binding dehydrogenase family protein [Theobroma cacao]
Swissprot	tr\|Q9SV68\|QORH_ARATH	4E-175	Putative quinone-oxidoreductase homolog, chloroplastic
trEMBL	tr\|A0A061DLX9\|A0A061DLX9_THECC	0	Oxidoreductase, zinc-binding dehydrogenase family protein {ECO:0000313\|EMBL:EOX93814.1}
TAIR10	AT4G13010.1	6E-135	Oxidoreductase, zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	112175064	112177860	+
GWHAAZE00000002	mRNA	112175064	112177860	+
GWHAAZE00000002	exon	112175064	112175076	+
GWHAAZE00000002	exon	112175187	112175269	+
GWHAAZE00000002	exon	112176223	112176364	+
GWHAAZE00000002	exon	112176718	112176809	+
GWHAAZE00000002	exon	112177171	112177860	+
GWHAAZE00000002	CDS	112175064	112175076	+
GWHAAZE00000002	CDS	112175187	112175269	+
GWHAAZE00000002	CDS	112176223	112176364	+
GWHAAZE00000002	CDS	112176718	112176809	+
GWHAAZE00000002	CDS	112177171	112177860	+

Transcript Sequence
>GWHTAAZE009561 ATGACAAGCGACGCCAACCAACCAACTAATATGGGGGAGAAGCTTATGCATGCGGTTAGGTACGATTCTTATGGTGGAGGTCCCACTGGTTTGAAGCATGTTGAGATTCCTCTACCTATTCCAAGTAAAGACGAGGTTTTGCTGAAACTCGAAGCTACTAGCCTAAATCCAGTTGATTGGAAAATGCAGAAAGGCATGCTGCGTCCTCTATTTCCCCGCAAATTTCCTTATATACCTGCTACCGATGTGGCAGGAGAAGTCGTAGATGTTGGACGTTACGTCAGTAATTTTAGAGTTGGTGATAAAGTGGTGGCCTTGCTTAGCCATGTTTCTGGAGGTGGACTAGCCGAGTATGCCGTGGCTAAGCAGAGTTTGACTGTTTTAAGGCCACCCGAAGTATCAGCTTCCGACGGTGCGGGGCTACTCGTTGCAGGTCTCACTGCTCACCAAGCCCTCACCCAAGCCGCTAGAATCAAGCTTGACGGGAGTGGCCCACGGATTAACATCCTCGTAACCGCTGCCTCTGGGGGTGTGGGCCACTATGCGGTCCAGTTGGCGAAGCTAGGGAACACGCATGTGACCGCCACTTGCGGGGCCCGTAACATGGACCTTGTGAAGAGCCTTGGGGCTGATGAGGTCCTTGATTACAAGACCCCCGAGGGGGAGGCCATGAGGAGCCCATCGGGGCAGAAATACGATTGGGTGATCCACTGCGCGTCAGGGATTTCTTGGTGCAAGTTTGAGCCACAGCTGAGCGTGAATGGGAAGGTGATCGATATTACGCCCGGGCCCCGTGCCATGTGGACCTTTGCGGTGAAGAAAATCACCTGCTCAAAGAAGCAGTTATTGCCATTGCTGTTATTACCGAAAGGGCAGAACTTGGATTTTCTAGTGAGCCTAGTGAAGGAAGGGAAGCTTAAGACAGTGGTGGATTCAATGCACCCTTTGGGCAAGGCAGAAGAAGCTTGGGCTAAGATAATTGAAGGCCATGCTACTGGGAAAATCTTTGTGTTGCCTTAG

Network for GWHGAAZE009549

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	44	105	1.60E-07
PF13602.7	ADH_zinc_N_2	208	335	1.50E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00224	CEQORH	Biosynthesis of secondary metabolites	map01110
K00224	CEQORH	alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.371
	SRR3591706	second leaf	9.937
	SRR3591707	mature leaf	25.580
	SRR3591708	Shoot apex	12.823
	SRR3591709	Stem	370.680
	SRR3591710	White floral bud	53.757
	SRR3591711	White flower	67.962
	SRR3591712	Green floral bud	27.567
	SRR3591713	Yellow flower	53.707
SRP173429	SRR8316895	Juvenile bud stage	35.151
	SRR8316896	Juvenile bud stage	33.914
	SRR8316897	Juvenile bud stage	8.675
	SRR8316894	Third green stage	7.822
	SRR8316900	Third green stage	25.761
	SRR8316901	Third green stage	27.211
	SRR8316898	Complete white stage	35.086
	SRR8316899	Complete white stage	50.600
	SRR8316903	Complete white stage	41.301
	SRR8316902	Silver flowering stage	30.394
	SRR8316904	Silver flowering stage	37.743
	SRR8316905	Silver flowering stage	20.632
	SRR8316906	Gold flowering stage	88.945
	SRR8316907	Gold flowering stage	82.199
	SRR8316908	Gold flowering stage	103.049
SRP132670	SRR6706286	Control	24.229
	SRR6706287	Light intensity 50%	26.413
	SRR6706288	Light intensity 20%	25.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.042
	CNS0095593	Slightly white alabastrum(diploid) 2	15.865
	CNS0095594	Slightly white alabastrum(diploid) 3	28.006
	CNS0095595	Whole white alabastrum(diploid) 2	17.527
	CNS0095596	Whole white alabastrum(diploid) 3	17.205
	CNS0095597	Whole white alabastrum(diploid) 4	16.736
	CNS0095598	Silvery flower (diploied) 1	34.612
	CNS0095599	Silvery flower (diploied) 2	33.209
	CNS0095600	Silvery flower (diploied) 3	79.478
	CNS0095601	Golden flower (diploid) 1	40.704
	CNS0095602	Golden flower (diploid) 2	81.513
	CNS0095603	Golden flower (diploid) 3	75.909
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.178
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.554
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.922
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.934
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.350
	CNS0095610	Silvery flower (tetraploid) 1	92.570
	CNS0095611	Silvery flower (tetraploid) 2	108.283
	CNS0095612	Silvery flower (tetraploid) 3	55.431
	CNS0095613	Golden flower (tetraploid) 1	89.476
	CNS0095614	Golden flower (tetraploid) 2	114.023
	CNS0095615	Golden flower (tetraploid) 3	167.758
CRA001975	CRR073297	Stem 1	54.954
	CRR073298	Stem 2	38.837
	CRR073299	Stem 3	51.821
	CRR073300	Leaf 1	25.846
	CRR073301	Leaf 2	23.718
	CRR073302	Leaf 3	29.541
	CRR073303	Juvenile bud 1	32.881
	CRR073304	Juvenile bud 2	34.592
	CRR073305	Juvenile bud 3	40.305
	CRR073306	Third green 1	20.771
	CRR073307	Third green 2	29.877
	CRR073308	Third green 3	23.599
	CRR073309	Second white 1	43.458
	CRR073310	Second white 2	30.559
	CRR073311	Second white 3	25.526
	CRR073312	Silver flowering 1	31.727
	CRR073313	Silver flowering 2	37.704
	CRR073314	Silver flowering 3	30.512
	CRR073315	Gold flowering 1	12.767
	CRR073316	Gold flowering 2	15.734
	CRR073317	Gold flowering 3	22.771
	CRR073318	Tawny withering 1	64.182
	CRR073319	Tawny withering 2	51.416
	CRR073320	Tawny withering 3	80.092