Gene detail

Detail information of GWHGAAZE009546

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009610544.1	PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis]
Swissprot	tr\|P43298\|TMK1_ARATH	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|M1AGV1\|M1AGV1_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400022521}
TAIR10	AT2G01820.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	112141964	112145241	+
GWHAAZE00000002	mRNA	112141964	112145241	+
GWHAAZE00000002	exon	112141964	112144094	+
GWHAAZE00000002	exon	112144568	112145098	+
GWHAAZE00000002	exon	112145193	112145241	+
GWHAAZE00000002	CDS	112141964	112144094	+
GWHAAZE00000002	CDS	112144568	112145079	+
GWHAAZE00000002	three_prime_UTR	112145080	112145098	+
GWHAAZE00000002	three_prime_UTR	112145193	112145241	+

Transcript Sequence
>GWHTAAZE009558 ATGTCCAAGCTCGCTAAATCCATCACTCCTACGCCTCGGGGCTGGACCGGCAACAACCCCTGCACGTGGAGCGGCATTAACTGCGACTCCTCCGGCAGAGTCTCCTCCATAAGTCTGGCCTCAAGATTTCTCTCGGGCCAGCTTCCCCCGGATCTGAACCAGCTTTCTAGCCTCGAGACACTCTATTTCCAACGGAACATGCTGAATGGGACATTACCGTCATTCGAAAACCTCGACTCCCTGCAAGAAATCCTTCTCGATGGCAATAATTTCACTTCCATCTCTCCCAAATTCCTCTCCGGATTGAGAAATTTACAGCATTTCTCCATCAGGGATAACGAGAATCTTGCACCGTGGACAATCCCTAAGAGCCTCACGGATTCGACTTTGCTTGTTAGCTTTCAGGCCAGTAAATGTGGTATTGTTGGCACTATACCGGATATATTCGGTTCGTTCCCAAATCTCGAGAATCTTCGCCTTTCGTATAACAATCTCACTGGATCTTTGCCTCCTTCCCTTGCCAAATCCGGTATTCAGCATTTATGGCTTAATAATCAGGTCCAAGGTCTCTCCGGTAGAATTGATGTGATTGGTACAATGACTCAATTGCAGCAAGTTTGGCTTCACGTTAATCAATTTTCCGGTCCAATTCCTGATCTCTCCAACTGTACTTCCTTATTCGATCTTCAGCTTCGAGAAAATCACCTAACTGGTGTGATTCCCCTGTCTCTGACTTCGCTGCCTAAGCTAGCTAATGTATCTTTGCAAGACAATGTGTTTCAAGGTCCAGTGCCCAGTTTTCGTAAAGAGGTTCAGGTGAATATTGGAACCGAAAACAGCTTTTGTAATACGAGCCCAGGTCCTTGTGATCCACAGGTGACCATTTTGCTTGCTGTAGCAGCGGGTTTGGGTTACCCTATGGCCTTGGCCGAGTCATGGAAAGGGAATGATCCTTGTCGAGATTGGAAGTTTATTTCATGTGATTCAAAGGGGCGTGTGAATGTGATCAACTTGGGGAAGCAGGATTTCGAGGGTGAGATTTCACCTGCCATTGCCAATCTGACTGCGTTAAAAACTTTGCTTTTGAATGACAACAAACTCACAGGATCGATACCTAATAGCTTGACTAGTTTGGAACAATTGCAACAACTTGATGTCTCTAATAACAATATTTCAGGCAAGATACCCGAGTTTGGTTCGCATGTGACACTGAAAACAAATGGCAATCCGTTCATTGGCAAAGATTTGCCAACGGAAGGTTCTGAAGGAGGACGAAGTTCTTCGGGAGGAAGTTCTTCGGGTGGAAGTTTTTTCGGTGGATCAAGTTCGAGCAAGTCTTCTTTACCGGCATGGCTGATTGCTCTTATTATTATCATTGTTGTGATAATTATGGTAGCTTTATGCTTGTTTATCTACAAACGCTATGTGAAGAAGTGCTCTCCAACTGGGAAGGAAAAGAGGAAGAAGGATGATGTGAATGCTTATGATAAGATTGGGGGTGAATCATCCGATCAAAGTAGTAACAACGACATGCATATCTACAGAAGTGGAAATGTTGCTATCTCGTTTGACATTTTGAAAGAAGCAACGAACAATTTTAGTGAAGATAACATTTTGGGTAGGGGTGGATTTGGTGTTGTTTACAAAGGCAAACTCAATGATGGGACAGTAATAGCCGTGAAGAGGATGGAATCGGCTGTAGCGCGTAAAAAGGGACATAGTGAGTTCCAAGCGGAAATTGAGGTCCTCACAAAAGTGAGGCACAGGCATTTAGTTGCACTCAATGGATTTTGTGATAATGGAAATGAGAAGCTTTTGGTGTATGAATACATGGCTAATGGGACATTAGGGCAGCATTTGTTTCATTGCAAGGAAATGGGGGTTCCTTCACTTACATGGAAACAAAGAGTCGCTATAGGATTAGACGTCGCAAGGGGAATTGAGTATTTGCACAGCTTAGCACAACAAAGTTTCATACATAGAGATTTAAAACCATCTAATATACTTCTTGGAGATGATATGAGGGGGAAGGTTTCTGATTTCGGTTTGGTCAAAAATGCCCCTGACGGGAAGTACTCGGTCGAGACACGCTTGGCTGGAACATTTGGATACCTGGCACCAGAGTACGCTGCCACCGGAAGAGTGACCACGAAAGTGGACGTGTTTGCCTTTGGGGTGGTCTTAATGGAGATGATCACAGGTAGAAAAGCACTAGATGAGAGCATGCCAGAGGAGGAGAGTCATTTGGTCACTTGGTTCAGAAAGGTCCTGAGCAACAAAGACTGGGTCCGAGCCTGTGTGGACCCCAAACTGGAACCTAACGAGGAAACCTTTGAGAGCATCTACGCAGTAGCCGAATTAGCAGGGCACTGCACCACTCGAGAGCCATATCAGAGGCCAGATATGGGACACGCAGTTAATGTATTGGCCCCACTTGTAGAGCAGTGGAAACCCACATCCCAACCCGTAGATCACTCCTTTGGGATTGATATGAGCCTCCCTCAAGCCTTGGCAAAATGGAAATCTAGTGAAGATACAACCATGACGAGTGATCTCCTTGATGGTTATTCACAAATGTCTAGAAGCTCGCCTACAAAGAATTCAACCATCGAAAGCTCATTCAATTCAAAGGATGCAAGATGAGTAGAAAGAGATTTACATGGGAGATTTGTGCTTTGATGAGTTACAAGGAGAACCGGAGCAGTTTGTGG

Network for GWHGAAZE009546

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	5	29	0.013
PF08263.13	LRRNT_2	290	328	0.00089
PF13855.7	LRR_8	351	391	1.90E-06
PF00069.26	Pkinase	534	807	1.30E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.441
	SRR3591706	second leaf	0.889
	SRR3591707	mature leaf	0.305
	SRR3591708	Shoot apex	1.341
	SRR3591709	Stem	1.274
	SRR3591710	White floral bud	71.757
	SRR3591711	White flower	4.799
	SRR3591712	Green floral bud	54.943
	SRR3591713	Yellow flower	3.689
SRP173429	SRR8316895	Juvenile bud stage	2.631
	SRR8316896	Juvenile bud stage	13.453
	SRR8316897	Juvenile bud stage	7.393
	SRR8316894	Third green stage	7.343
	SRR8316900	Third green stage	32.434
	SRR8316901	Third green stage	33.382
	SRR8316898	Complete white stage	0.122
	SRR8316899	Complete white stage	0.236
	SRR8316903	Complete white stage	0.134
	SRR8316902	Silver flowering stage	0.676
	SRR8316904	Silver flowering stage	1.588
	SRR8316905	Silver flowering stage	0.402
	SRR8316906	Gold flowering stage	0.216
	SRR8316907	Gold flowering stage	0.139
	SRR8316908	Gold flowering stage	0.235
SRP132670	SRR6706286	Control	18.776
	SRR6706287	Light intensity 50%	17.252
	SRR6706288	Light intensity 20%	14.715
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.304
	CNS0095593	Slightly white alabastrum(diploid) 2	25.035
	CNS0095594	Slightly white alabastrum(diploid) 3	36.056
	CNS0095595	Whole white alabastrum(diploid) 2	57.599
	CNS0095596	Whole white alabastrum(diploid) 3	70.173
	CNS0095597	Whole white alabastrum(diploid) 4	71.065
	CNS0095598	Silvery flower (diploied) 1	2.300
	CNS0095599	Silvery flower (diploied) 2	6.698
	CNS0095600	Silvery flower (diploied) 3	1.438
	CNS0095601	Golden flower (diploid) 1	1.653
	CNS0095602	Golden flower (diploid) 2	1.926
	CNS0095603	Golden flower (diploid) 3	1.707
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.755
	CNS0095605	Slightly white alabastrum(tetraploid) 2	62.046
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.316
	CNS0095607	Whole white alabastrum(tetraploid) 1	80.739
	CNS0095608	Whole white alabastrum(tetraploid) 2	89.476
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.684
	CNS0095610	Silvery flower (tetraploid) 1	1.662
	CNS0095611	Silvery flower (tetraploid) 2	4.341
	CNS0095612	Silvery flower (tetraploid) 3	11.878
	CNS0095613	Golden flower (tetraploid) 1	1.447
	CNS0095614	Golden flower (tetraploid) 2	0.393
	CNS0095615	Golden flower (tetraploid) 3	5.289
CRA001975	CRR073297	Stem 1	9.613
	CRR073298	Stem 2	9.202
	CRR073299	Stem 3	4.707
	CRR073300	Leaf 1	37.338
	CRR073301	Leaf 2	29.358
	CRR073302	Leaf 3	13.513
	CRR073303	Juvenile bud 1	29.717
	CRR073304	Juvenile bud 2	20.155
	CRR073305	Juvenile bud 3	3.942
	CRR073306	Third green 1	11.154
	CRR073307	Third green 2	12.265
	CRR073308	Third green 3	11.155
	CRR073309	Second white 1	0.352
	CRR073310	Second white 2	1.641
	CRR073311	Second white 3	3.709
	CRR073312	Silver flowering 1	14.313
	CRR073313	Silver flowering 2	14.334
	CRR073314	Silver flowering 3	9.438
	CRR073315	Gold flowering 1	12.098
	CRR073316	Gold flowering 2	4.303
	CRR073317	Gold flowering 3	3.635
	CRR073318	Tawny withering 1	11.775
	CRR073319	Tawny withering 2	13.006
	CRR073320	Tawny withering 3	11.957