Gene detail

Detail information of GWHGAAZE009542

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008244684.1	3.6582E-111	PREDICTED: transcription factor bHLH62 [Prunus mume]
Swissprot	tr\|Q9FJL4\|BH078_ARATH	4E-73	Transcription factor bHLH78
trEMBL	tr\|M5VNC0\|M5VNC0_PRUPE	4E-110	Uncharacterized protein {ECO:0000313\|EMBL:EMJ02381.1}
TAIR10	AT5G48560.1	5E-62	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	112097177	112098539	+
GWHAAZE00000002	mRNA	112097177	112098539	+
GWHAAZE00000002	exon	112097177	112097653	+
GWHAAZE00000002	exon	112097818	112098030	+
GWHAAZE00000002	exon	112098127	112098192	+
GWHAAZE00000002	exon	112098286	112098354	+
GWHAAZE00000002	exon	112098450	112098539	+
GWHAAZE00000002	CDS	112097177	112097653	+
GWHAAZE00000002	CDS	112097818	112098030	+
GWHAAZE00000002	CDS	112098127	112098192	+
GWHAAZE00000002	CDS	112098286	112098354	+
GWHAAZE00000002	CDS	112098450	112098539	+

Transcript Sequence
>GWHTAAZE009554 GACCATTTTCTTGATGAAAACTTACCCAATTTGCGGAATTCAATTCCTCTGAGTCCGAATTTGCCTGCCATTTCCACCGATCCCGGATTTGCAGAGAGGGCTGCCAAGTTTTCTTGCTTCGGTAGCCGGAGTTTCAATGGCCGAACGAGCCAATTTGGGCTTAAAAACACTGAATTTCAACCTATATCTAGTAACCCATTTCTTGGTAGTGGAAAATTGCCAAGAATTTCTAGTAGCCCTTCTATCAAATTAGCAGGGCCTCCATTGGGTTCACAAGAAAACAAGAATTTGGCTCAAACCCAGATGGAATTGAATTCTGATAAGAAATTAAGTAGATTATCTGCCTCTGCTGCTAATTCCAATGAGGATTCCTCTGTTTCTGAACAAATCCCAAGTGGAGAGAAAACTCCAATTGACTTAAATTCAAGAAAGAGGAAAGCAATTTCCAAGGGAAAATTGAAGGAAACACCCACAAAGGAAGAAGAAGCTAATGATGATTCGAATTTGAAAAGATCCAAACAACAAGAAAACAGAGGAGATGGAATTGGAGATGTTAAAACAGAGGAGGATACAAAAAGAGAGGAAAACGAAGCCAAGAATGGGCCAAAGCCCACCGAACCACCAAAGGACTATATTCATGTGAGGGCAAGAAGGGGCCAAGCTACAGATAGCCATAGTCTAGCCGAAAGAGTTCGAAGAGAGAAGATTAGCGAAAGAATGAAGCTTCTCCAAGATCTTGTACCGGGTTGCAATAAGGTGACCGGAAAAGCACTAATGCTTGATGAGATCATAAATTATGTACAATCATTACAACGCCAAGTTGAGTTCCTTTCCATGAAGTTATCTTCCGTGAATCCAAGAATGGATTTTAACATAGACACTCACATTCCAAAGGATGTAAGTTTTTTGGCATAA

Network for GWHGAAZE009542

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	224	271	1.90E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.370
	SRR3591706	second leaf	1.365
	SRR3591707	mature leaf	0.564
	SRR3591708	Shoot apex	1.900
	SRR3591709	Stem	20.103
	SRR3591710	White floral bud	8.926
	SRR3591711	White flower	6.359
	SRR3591712	Green floral bud	3.957
	SRR3591713	Yellow flower	0.123
SRP173429	SRR8316895	Juvenile bud stage	1.294
	SRR8316896	Juvenile bud stage	1.560
	SRR8316897	Juvenile bud stage	0.994
	SRR8316894	Third green stage	0.979
	SRR8316900	Third green stage	2.306
	SRR8316901	Third green stage	4.679
	SRR8316898	Complete white stage	2.251
	SRR8316899	Complete white stage	8.463
	SRR8316903	Complete white stage	6.738
	SRR8316902	Silver flowering stage	5.571
	SRR8316904	Silver flowering stage	4.686
	SRR8316905	Silver flowering stage	0.616
	SRR8316906	Gold flowering stage	1.051
	SRR8316907	Gold flowering stage	1.812
	SRR8316908	Gold flowering stage	2.031
SRP132670	SRR6706286	Control	2.867
	SRR6706287	Light intensity 50%	2.785
	SRR6706288	Light intensity 20%	2.729
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.943
	CNS0095593	Slightly white alabastrum(diploid) 2	1.389
	CNS0095594	Slightly white alabastrum(diploid) 3	1.299
	CNS0095595	Whole white alabastrum(diploid) 2	3.147
	CNS0095596	Whole white alabastrum(diploid) 3	0.545
	CNS0095597	Whole white alabastrum(diploid) 4	1.567
	CNS0095598	Silvery flower (diploied) 1	9.139
	CNS0095599	Silvery flower (diploied) 2	2.471
	CNS0095600	Silvery flower (diploied) 3	4.195
	CNS0095601	Golden flower (diploid) 1	5.572
	CNS0095602	Golden flower (diploid) 2	5.130
	CNS0095603	Golden flower (diploid) 3	5.231
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.518
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.665
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.454
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.423
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.288
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.854
	CNS0095610	Silvery flower (tetraploid) 1	3.570
	CNS0095611	Silvery flower (tetraploid) 2	1.973
	CNS0095612	Silvery flower (tetraploid) 3	1.185
	CNS0095613	Golden flower (tetraploid) 1	0.455
	CNS0095614	Golden flower (tetraploid) 2	0.562
	CNS0095615	Golden flower (tetraploid) 3	0.434
CRA001975	CRR073297	Stem 1	1.677
	CRR073298	Stem 2	1.738
	CRR073299	Stem 3	0.587
	CRR073300	Leaf 1	2.453
	CRR073301	Leaf 2	3.011
	CRR073302	Leaf 3	1.793
	CRR073303	Juvenile bud 1	0.701
	CRR073304	Juvenile bud 2	2.025
	CRR073305	Juvenile bud 3	4.585
	CRR073306	Third green 1	2.947
	CRR073307	Third green 2	3.820
	CRR073308	Third green 3	5.153
	CRR073309	Second white 1	0.121
	CRR073310	Second white 2	0.492
	CRR073311	Second white 3	0.559
	CRR073312	Silver flowering 1	0.104
	CRR073313	Silver flowering 2	0.293
	CRR073314	Silver flowering 3	0.197
	CRR073315	Gold flowering 1	3.334
	CRR073316	Gold flowering 2	2.763
	CRR073317	Gold flowering 3	0.503
	CRR073318	Tawny withering 1	22.536
	CRR073319	Tawny withering 2	11.219
	CRR073320	Tawny withering 3	18.086