Gene detail

Detail information of GWHGAAZE009536

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011089032.1	5.3496E-101	PREDICTED: E3 ubiquitin-protein ligase CHIP-like isoform X3 [Sesamum indicum]
Swissprot	tr\|Q9SRS9\|CHIP_ARATH	4E-75	E3 ubiquitin-protein ligase CHIP {ECO:0000305}
trEMBL	tr\|A5B3P2\|A5B3P2_VITVI	1E-96	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN63106.1}
TAIR10	AT3G07370.1	3E-62	carboxyl terminus of HSC70-interacting protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	111949713	111952423	+
GWHAAZE00000002	mRNA	111949713	111952423	+
GWHAAZE00000002	exon	111949713	111949894	+
GWHAAZE00000002	exon	111950096	111950178	+
GWHAAZE00000002	exon	111950289	111950446	+
GWHAAZE00000002	exon	111951368	111951501	+
GWHAAZE00000002	exon	111951597	111951747	+
GWHAAZE00000002	exon	111951962	111952072	+
GWHAAZE00000002	exon	111952298	111952423	+
GWHAAZE00000002	CDS	111949713	111949894	+
GWHAAZE00000002	CDS	111950096	111950178	+
GWHAAZE00000002	CDS	111950289	111950446	+
GWHAAZE00000002	CDS	111951368	111951501	+
GWHAAZE00000002	CDS	111951597	111951747	+
GWHAAZE00000002	CDS	111951962	111952072	+
GWHAAZE00000002	CDS	111952298	111952423	+

Transcript Sequence
>GWHTAAZE009548 ATGTCTGCATGTAATTCAATAGAAGCTTTCTTCGACTCCCCAGTGGAAAAAGCTGAATATTCATCTGTGTGGATGTTTCTAAGCTGTGAAGTATTTAAGCCTTTAAGGATAAACAAATTCAGTACTTATAAACAGGAGGGAAAATTAGCACTTTCTATGGTCCTTAATCAAGCAACTCTAGAGGTGGATGGTGATGCTAGATCTTTTCCTTGTGCTTCTCCTCTGTTAGCTGAAGCTTTTCGTGTTGCATCTCTATGGGCCTTAGGTGTGAGACATCATTATATCCCTTCTTCCACTCCTCATATTTCATTTGAGATTGTTCGCAGAGAAGGTAATAGAGTCGCTCATTGGTTTGCTTCGCAGCTCAAGTTAGCTAAGCTTCCTCTAGATTGGAGGTCTAGTTTTCCAGTTGGGTTGGTTAAGGCTTTGGATCTTGGGAGAGGTGCAAATCCTAAGAGCTATATAGTGGAGGAGATTTGGCAGGAGCTTGCAAAGGCAAGGTACCTTGAGTGGGAGCATGAATCTACTAAACGATCGTGGGACTTGCAGAACTTGAAAGAAGCATGTGAGACAGCTCTTAAAGAAAAACATTTGCGAGACATTTCTCAAACAGAAGGGTTTATAGATGAAATTCTTTCCAGTTCGGAACAATTGGAGGCTCTGGGCAAAGTATTCAAGAAGGCTGCTGAAGCTGACACTCCAACTGAGGTGCCGGACTACCTATGTTGTAAAATTACGCTTGATATTTTCCGTGATCCCGTGATTACTCCAAGTGGGTTTACGTATGAGAGGGCAGTGATTATTGATCATATTCACAAGGTGGGCCAATTTGATCCCATTACACGTGAACCACTCTATCAGTCCCAGTTGGTGCCAAATTTGGCTATAAAAGAAGCAGTGCAAGCATTTCTGGAGCAGCATGGTTGGGCTTACCAGGTCGATTAA

Network for GWHGAAZE009536

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.16	U-box	237	309	4.20E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09561	STUB1, CHIP	Protein processing in endoplasmic reticulum	map04141
K09561	STUB1, CHIP	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.819
	SRR3591706	second leaf	9.472
	SRR3591707	mature leaf	18.631
	SRR3591708	Shoot apex	19.602
	SRR3591709	Stem	25.668
	SRR3591710	White floral bud	23.764
	SRR3591711	White flower	23.707
	SRR3591712	Green floral bud	22.741
	SRR3591713	Yellow flower	22.911
SRP173429	SRR8316895	Juvenile bud stage	17.149
	SRR8316896	Juvenile bud stage	33.156
	SRR8316897	Juvenile bud stage	22.029
	SRR8316894	Third green stage	5.248
	SRR8316900	Third green stage	18.285
	SRR8316901	Third green stage	19.175
	SRR8316898	Complete white stage	8.731
	SRR8316899	Complete white stage	30.829
	SRR8316903	Complete white stage	14.074
	SRR8316902	Silver flowering stage	11.085
	SRR8316904	Silver flowering stage	12.290
	SRR8316905	Silver flowering stage	6.675
	SRR8316906	Gold flowering stage	26.782
	SRR8316907	Gold flowering stage	24.484
	SRR8316908	Gold flowering stage	24.373
SRP132670	SRR6706286	Control	13.209
	SRR6706287	Light intensity 50%	16.019
	SRR6706288	Light intensity 20%	15.165
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.359
	CNS0095593	Slightly white alabastrum(diploid) 2	25.776
	CNS0095594	Slightly white alabastrum(diploid) 3	22.000
	CNS0095595	Whole white alabastrum(diploid) 2	27.196
	CNS0095596	Whole white alabastrum(diploid) 3	19.443
	CNS0095597	Whole white alabastrum(diploid) 4	18.333
	CNS0095598	Silvery flower (diploied) 1	15.796
	CNS0095599	Silvery flower (diploied) 2	25.908
	CNS0095600	Silvery flower (diploied) 3	17.103
	CNS0095601	Golden flower (diploid) 1	35.664
	CNS0095602	Golden flower (diploid) 2	35.845
	CNS0095603	Golden flower (diploid) 3	35.396
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.975
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.805
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.790
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.548
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.635
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.326
	CNS0095610	Silvery flower (tetraploid) 1	15.728
	CNS0095611	Silvery flower (tetraploid) 2	15.186
	CNS0095612	Silvery flower (tetraploid) 3	13.746
	CNS0095613	Golden flower (tetraploid) 1	15.174
	CNS0095614	Golden flower (tetraploid) 2	15.461
	CNS0095615	Golden flower (tetraploid) 3	19.990
CRA001975	CRR073297	Stem 1	13.877
	CRR073298	Stem 2	12.367
	CRR073299	Stem 3	9.314
	CRR073300	Leaf 1	15.143
	CRR073301	Leaf 2	10.822
	CRR073302	Leaf 3	8.953
	CRR073303	Juvenile bud 1	10.788
	CRR073304	Juvenile bud 2	8.865
	CRR073305	Juvenile bud 3	9.433
	CRR073306	Third green 1	5.607
	CRR073307	Third green 2	5.325
	CRR073308	Third green 3	5.168
	CRR073309	Second white 1	2.431
	CRR073310	Second white 2	5.500
	CRR073311	Second white 3	5.186
	CRR073312	Silver flowering 1	3.181
	CRR073313	Silver flowering 2	4.023
	CRR073314	Silver flowering 3	5.205
	CRR073315	Gold flowering 1	4.729
	CRR073316	Gold flowering 2	9.185
	CRR073317	Gold flowering 3	4.831
	CRR073318	Tawny withering 1	16.909
	CRR073319	Tawny withering 2	23.382
	CRR073320	Tawny withering 3	18.684