Detail information of GWHGAAZE009490


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009358936.10PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Pyrus x bretschneideri]
Swissprottr|Q9ASS4|Y5838_ARATH0Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (Precursor)
trEMBLtr|M5VNV6|M5VNV6_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ02932.1}
TAIR10AT5G48380.10BAK1-interacting receptor-like kinase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene111070330111073033-
GWHAAZE00000002mRNA111070330111073033-
GWHAAZE00000002exon111070330111071277-
GWHAAZE00000002exon111072200111073033-
GWHAAZE00000002CDS111072200111073033-
GWHAAZE00000002CDS111070330111071277-
Transcript Sequence

Network for GWHGAAZE009490

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0261Protein Kinases RLK-Pelle_CrRLK1L-1 family Protein Kinases RLK-Pelle_CrRLK1L-1
Protein Kinases RLK-Pelle_LRR-Xa family Protein Kinases RLK-Pelle_LRR-Xa
Protein Kinases RLK-Pelle_RLCK-IV family Protein Kinases RLK-Pelle_RLCK-IV
Transcription factor MADS-MIKC family Transcription factor MADS-MIKC
GO:0006783 heme biosynthetic process GOslim:biological_process
GO:0006468 protein phosphorylation GOslim:biological_process
GO:0005524 ATP binding GOslim:molecular_function
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity GOslim:molecular_function
GO:0004325 ferrochelatase activity GOslim:molecular_function
GO:0004672 protein kinase activity GOslim:molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding GOslim:molecular_function
GO:0045944 positive regulation of transcription by RNA polymerase II GOslim:biological_process
GO:0042254 ribosome biogenesis GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_227708.70E-06
PF07714.18PK_Tyr_Ser-Thr3045547.70E-37
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-Xa

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.079
SRR3591706second leaf6.837
SRR3591707mature leaf6.863
SRR3591708Shoot apex10.116
SRR3591709Stem33.153
SRR3591710White floral bud5.855
SRR3591711White flower6.599
SRR3591712Green floral bud4.961
SRR3591713Yellow flower1.924
SRP173429 SRR8316895Juvenile bud stage 12.098
SRR8316896Juvenile bud stage 9.864
SRR8316897Juvenile bud stage 2.620
SRR8316894Third green stage 1.941
SRR8316900Third green stage 5.675
SRR8316901Third green stage 7.463
SRR8316898Complete white stage 0.714
SRR8316899Complete white stage 13.924
SRR8316903Complete white stage 1.138
SRR8316902Silver flowering stage0.884
SRR8316904Silver flowering stage0.977
SRR8316905Silver flowering stage0.187
SRR8316906Gold flowering stage 1.110
SRR8316907Gold flowering stage 1.550
SRR8316908Gold flowering stage 1.216
SRP132670SRR6706286Control6.423
SRR6706287Light intensity 50%6.932
SRR6706288Light intensity 20%6.183
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.954
CNS0095593Slightly white alabastrum(diploid) 27.403
CNS0095594Slightly white alabastrum(diploid) 38.714
CNS0095595Whole white alabastrum(diploid) 26.150
CNS0095596Whole white alabastrum(diploid) 32.782
CNS0095597Whole white alabastrum(diploid) 46.108
CNS0095598Silvery flower (diploied) 111.627
CNS0095599Silvery flower (diploied) 213.693
CNS0095600Silvery flower (diploied) 35.485
CNS0095601Golden flower (diploid) 110.836
CNS0095602Golden flower (diploid) 212.793
CNS0095603Golden flower (diploid) 312.330
CNS0095604Slightly white alabastrum(tetraploid) 13.496
CNS0095605Slightly white alabastrum(tetraploid) 22.224
CNS0095606Slightly white alabastrum(tetraploid) 37.293
CNS0095607Whole white alabastrum(tetraploid) 12.836
CNS0095608Whole white alabastrum(tetraploid) 21.903
CNS0095609Whole white alabastrum(tetraploid) 34.090
CNS0095610Silvery flower (tetraploid) 14.379
CNS0095611Silvery flower (tetraploid) 23.338
CNS0095612Silvery flower (tetraploid) 31.689
CNS0095613Golden flower (tetraploid) 10.647
CNS0095614Golden flower (tetraploid) 22.321
CNS0095615Golden flower (tetraploid) 30.645
CRA001975CRR073297Stem 19.968
CRR073298Stem 210.118
CRR073299Stem 37.940
CRR073300Leaf 110.463
CRR073301Leaf 212.401
CRR073302Leaf 35.989
CRR073303Juvenile bud 15.648
CRR073304Juvenile bud 24.661
CRR073305Juvenile bud 36.316
CRR073306Third green 10.703
CRR073307Third green 20.137
CRR073308Third green 30.842
CRR073309Second white 10.167
CRR073310Second white 20.438
CRR073311Second white 30.380
CRR073312Silver flowering 10.141
CRR073313Silver flowering 20.195
CRR073314Silver flowering 30.180
CRR073315Gold flowering 17.099
CRR073316Gold flowering 215.716
CRR073317Gold flowering 38.636
CRR073318Tawny withering 116.821
CRR073319Tawny withering 220.341
CRR073320Tawny withering 320.362